- Basic information
- CohesinDB ID: CDBP00416584
- Locus: chr21-31429497-31430191
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Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: RPE, Fibroblast, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 76%,
"5_TxWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, CHD8, SMC1A, FOXA2, MYCN, POU5F1, ZFX, XBP1, ZBTB48, WT1, ZSCAN5A, ZNF770, ERG3, TET2, PBX2, ERG2, ZFHX2, ZNF18, PRDM10, YY1, RELA, MYC, SP140, ZIC2, GRHL3, APC, MAX, ZNF143, IKZF1, CDK8, MED1, SCRT2, EZH2, LMO2, ESR1, PKNOX1, OCA2, ZNF334, EGR2, CTCF, KLF1, AR, PAX8, MXD3, EGR1, ZBTB42, HSF1, NOTCH3, SCRT1, BRD4, CLOCK, E2F1, MAZ, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops