- Basic information
- CohesinDB ID: CDBP00416594
- Locus: chr21-31456234-31456513
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 77%,
"5_TxWk": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, SMC1A, PPARG, ZNF496, POU5F1, MYCN, PGR, CBX1, ZFX, CREM, WT1, ZBTB48, STAT1, FOXA1, DUX4, SRF, ZNF770, SUZ12, ZNF28, ERG, YY1, ASCL1, ETS1, CDK6, RAD21, SP140, ARNT, HIF1A, CHD7, RXRA, TAL1, PAX5, NRIP1, CDK8, ZNF467, CEBPB, NCOA3, TEAD1, TRIM28, EZH2, TP53, ESR1, ZNF334, CTCF, USF1, SPI1, BCL11A, AR, GATA2, BRD4, MAZ, SMC1, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
- Related loop:
chr21:27500000-27525000~~chr21:31450000-31475000,
chr21:31075000-31100000~~chr21:31450000-31475000,
chr21:31175000-31200000~~chr21:31450000-31475000,
chr21:31197648-31199955~~chr21:31457221-31458650,
chr21:31200000-31225000~~chr21:31450000-31475000,
chr21:31346727-31348487~~chr21:31457134-31458652,
chr21:31450000-31475000~~chr21:31550000-31575000,
chr21:31450000-31475000~~chr21:31575000-31600000,
chr21:31450000-31475000~~chr21:31600000-31625000,
chr21:31458665-31460618~~chr21:31579948-31582262,