- Basic information
- CohesinDB ID: CDBP00416605
- Locus: chr21-31482043-31482674
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Data sourse: GSE206145-NatGen2015, GSE111913, GSE120943
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Cell type: RT-112, Fibroblast, Monocytes
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 54%,
"15_Quies": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZSCAN5D, MYCN, CEBPA, ZFX, ZNF534, ZNF317, ZBTB17, FOXF1, ERG3, ERG2, ZFHX2, KDM1A, YY1, RELA, CREBBP, ATF3, MYC, OSR2, ARNT, HIF1A, ATF4, TAL1, MAX, ZNF143, RCOR1, HAND2, CEBPG, CEBPB, CREB1, ZMYM3, KLF10, KLF9, L3MBTL2, ZNF334, SETDB1, EGR2, CTCF, RBM25, BCOR
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops