Deatailed information for cohesin site CDBP00416606


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  • Basic information
  • CohesinDB ID: CDBP00416606
  • Locus: chr21-31484286-31484552
  • Data sourse: ENCSR000BLD, GSE86191
  • Cell type: H1-hESC, HCT-116
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 0% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.978
  • Subunit: Rad21
  • CTCF binding site: non-CTCF CTCF motif: False
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: Boundary
  • Chromatin hubs: non-Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 59% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): False
  • Chromatin annotation: "9_Het": 49%, "15_Quies": 38%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: GLIS1, PGR, CBFA2T2, ZSCAN5D, MYCN, ZNF263, SOX2, ZFX, XBP1, DUX4, ZSCAN5A, WT1, FOXA1, ZBTB48, TET2, SUZ12, HOXB13, ZNF28, KDM1A, YY1, RELA, CREBBP, CHD7, SP140, ZIC2, ARNT, RAD21, GRHL3, NRIP1, ZNF143, MED1, CBX2, NR3C1, MYOG, TEAD1, TRIM28, NFE2L2, EZH2, ESR1, OCA2, ZNF334, SETDB1, ZNF565, MYOD1, USF2, CTCF, TCF12, HDAC2, HSF1, BRD4, SCRT1, MAZ, TEAD4, STAG1, TFAP2C
  • Target gene symbol (double-evidenced CRMs): TIAM1
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 2
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops

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