- Basic information
- CohesinDB ID: CDBP00416607
- Locus: chr21-31485601-31488082
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Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE111913, GSE105028, GSE206145-NatGen2015, GSE206145
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Cell type: RPE, H1-hESC, Fibroblast, HCT-116, RT-112, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
59% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 42%,
"9_Het": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, PGR, CBFA2T2, ZSCAN5D, MYCN, ZNF263, SOX2, ZFX, XBP1, DUX4, ZSCAN5A, WT1, FOXA1, ZBTB48, TET2, SUZ12, HOXB13, ZNF28, KDM1A, YY1, RELA, CREBBP, CHD7, SP140, ZIC2, ARNT, RAD21, GRHL3, NRIP1, ZNF143, MED1, CBX2, NR3C1, MYOG, TEAD1, TRIM28, NFE2L2, EZH2, ESR1, OCA2, ZNF334, SETDB1, ZNF565, MYOD1, USF2, CTCF, TCF12, HDAC2, HSF1, BRD4, SCRT1, MAZ, TEAD4, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 42
- Number of somatic mutations (non-coding): 0
- Related genes and loops