- Basic information
- CohesinDB ID: CDBP00416620
- Locus: chr21-31511093-31511298
-
Data sourse: GSE110061, GSE86191
-
Cell type: HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 61%,
"5_TxWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: GLIS1, FOSL1, ZSCAN5D, ZFX, XBP1, ZSCAN5A, FOXA1, ZNF770, PRDM10, KDM1A, RELA, GRHL3, NRIP1, ZNF143, ESRRA, CEBPB, ZNF121, ZMYM3, KLF10, EZH2, ESR1, MED26, KLF9, AR, RBM25, BRD4, PHIP, BCOR
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
- Related loop:
chr21:27500000-27525000~~chr21:31500000-31525000,
chr21:31175000-31200000~~chr21:31500000-31525000,
chr21:31197748-31199515~~chr21:31508678-31510577,
chr21:31250000-31275000~~chr21:31500000-31525000,
chr21:31325000-31350000~~chr21:31500000-31525000,
chr21:31346852-31348335~~chr21:31508604-31510568,
chr21:31346859-31348357~~chr21:31514086-31515684,
chr21:31350000-31375000~~chr21:31500000-31525000,
chr21:31375000-31400000~~chr21:31500000-31525000,