- Basic information
- CohesinDB ID: CDBP00416623
- Locus: chr21-31517621-31517976
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Data sourse: GSE206145-GSE177045, GSE73207, ENCSR230ZWH, ENCSR917QNE
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Cell type: MCF-7, Liver, TF-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 65%,
"5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, BRD3, EBF1, TOP2A, ZNF600, CTBP1, MTA2, ZBTB48, FOXA1, ZNF770, HOXB13, ERG, RELA, TARDBP, NFKB2, MYC, GRHL3, HMBOX1, GABPA, TAL1, BATF, GATA1, SFPQ, NR2F2, MYB, EZH2, LMO2, ESR1, PKNOX1, BRD2, TCF12, BAF155, BCL11A, AR, GATA2, ZNF479, PHIP, FOXP1, RELB, ZIM3, ZNF24
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops