- Basic information
- CohesinDB ID: CDBP00416629
- Locus: chr21-31524208-31524413
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Data sourse: ENCSR000BLD, ENCSR000ECE
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Cell type: H1-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 70%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, MEIS2, XBP1, PATZ1, FOXA1, ZFHX2, ATF3, ZNF362, ZBTB44, PRDM1, CHD7, ZNF189, MITF, ZNF629, KLF5, TEAD1, TRIM28, NFE2L2, ESR1, ZNF561, CTCF, JUN, EP300, KLF1, RYBP, SOX4, E2F6, ZNF423, E2F1, ZNF528, TFAP2C, GLIS1, NANOG, CHD8, POU2F2, ZSCAN5D, POU5F1, TOP2A, CTBP1, ZNF317, ZBTB17, ZBTB48, SRF, DDX5, ERG2, SP4, HIC1, ERG, ZNF341, MYC, EOMES, KDM4A, RAD21, GRHL3, RXRA, STAT3, CREB1, EZH2, KLF8, GRHL2, HDAC2, GATA2, FLI1, ZNF490, MRTFB, NCOA2, ZNF554, CBX1, SMC1A, ZFX, SMAD3, ERG3, PRDM10, CREBBP, ZNF384, ZNF35, OSR2, ZNF184, SP3, ZBTB10, ZEB2, FOXM1, SP2, FOS, CDK8, MED1, ICE2, ZNF264, ZNF680, SCRT2, KLF9, SETDB1, KLF16, SP1, NIPBL, TFAP2A, HNF4A, REST, CTBP2, PHIP, GLIS2, FOXP1, MBD2, STAG1, FOXA2, CBX3, CHD2, PAF1, ZNF600, ZNF692, WT1, CDK9, HOXB13, YY1, RELA, AHR, ZIC2, HIF1A, OTX2, GATA3, KLF15, TAL1, MAX, NRIP1, TLE3, SP7, NCOA3, NR2F2, NR2F1, TCF7L2, KDM5B, TP53, ZNF334, EGR2, BRD2, T, AR, ZNF324, ZBTB42, EGR1, HEXIM1, MYNN, HSF1, NOTCH3, JUND, BRD4, SCRT1, MAZ, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops