- Basic information
- CohesinDB ID: CDBP00416632
- Locus: chr21-31532751-31533327
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Data sourse: GSE105028, GSE67783, ENCSR000BKV
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Cell type: K-562, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 67%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MBD3, NFIA, PGR, ZNF660, ZSCAN5C, SOX2, XBP1, PATZ1, FOXA1, ZNF28, ZFHX2, TFAP4, MEN1, ZC3H8, NFIC, ZFP64, ZNF362, CTCFL, CHD7, WDHD1, PRDM1, IKZF3, ZBTB44, ZNF273, ZNF189, MZF1, ZSCAN4, HDAC3, ZNF467, ZNF629, TEAD1, ELF1, ZNF121, ETV1, ZNF217, ESR1, ZNF624, PITX3, ZNF561, JUN, TCF12, CTCF, EP300, BAF155, KLF1, LMO1, MNT, GATA6, ZNF577, DPF2, ZBTB20, RFX5, ZNF423, E2F1, ZNF528, NR5A2, TEAD4, PDX1, TFAP2C, EED, GLIS1, CHD8, POU5F1, MYCN, TOP2A, BRD3, ZNF263, CTBP1, ERF, ZBTB17, ZBTB48, DUX4, ZNF778, ZNF317, ZSCAN21, SRF, DDX5, ERG2, SP4, ERG, ASCL1, ZBTB8A, ZNF341, MYC, RFX1, RAD21, GRHL3, NKX2-1, GABPA, STAT3, NKX3-1, PRDM14, RCOR1, ZNF639, NR3C1, ESRRA, CEBPB, CREB1, EZH2, KLF8, GRHL2, FEZF1, EBF3, TRPS1, ZKSCAN5, ZNF786, ZSCAN2, ZNF257, KLF17, HDAC2, GATA2, MXI1, MRTFB, NCOA2, ZNF554, RUNX1, ZNF45A, CBX1, SMC1A, NKX2-2, SIN3A, ZFX, AFF4, ZNF335, SMAD3, TET2, ERG3, ZNF770, SMARCC1, PRDM10, TWIST1, ZNF18, ZXDC, CREBBP, ZNF35, ZNF384, RUNX2, GATA4, OSR2, ZNF184, PBX4, ARNT, NFIB, DAXX, ZNF708, ZNF518A, ZEB2, FOXM1, MAFB, SP2, MED1, ZXDB, MYB, PIAS1, ZMYM3, NCOA1, TBX5, NUP98-HOXA9, NIPBL, TFAP2A, SP1, NKX2-5, REST, ARID1A, ZBTB7A, ASH2L, HOXA9, CTBP2, PHIP, MBD2, FOXP1, PRDM6, SMC3, ZNF34, STAG1, ZNF394, CBFA2T2, FOXA2, TBL1X, CHD2, ZNF600, ZNF692, ZSCAN16, WT1, ZNF30, ESR2, ZNF574, HOXB13, KLF7, ZNF580, KDM1A, YY1, RELA, NEUROD1, ISL1, SP140, ZIC2, HIF1A, ZNF610, OTX2, GATA3, KLF15, MAX, NRIP1, ZNF143, HAND2, TLE3, ZFP69B, SP7, NCOA3, NR2F2, GFI1B, NR2F1, TCF7L2, KDM5B, TP53, ZNF687, ZBTB6, ZNF334, ZSCAN22, MYOD1, EGR2, PHOX2B, ELF3, T, BRD2, AR, ZNF324, EGLN2, ZBTB42, EGR1, ZNF366, HSF1, NCOR1, JUND, BRD4, SCRT1, MAZ, TBX2, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops