- Basic information
- CohesinDB ID: CDBP00416634
- Locus: chr21-31537492-31538470
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, ENCSR000FAD, ENCSR000BSB, GSE126634, ENCSR000BLY, GSE105028, GSE121355, GSE103477, GSE131606, GSE25021, ENCSR000BTU, GSE93080, ENCSR000DZP, ENCSR000EAC, GSE143937, ENCSR000BKV, GSE67783, GSE138405, GSE152721, GSE106870, GSE145327, GSE206145, ENCSR000ECE, ENCSR000EHX, GSE97394, GSE110061, GSE129526, GSE155324, GSE126990, GSE50893
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Cell type: MDM, GM10847, GM2610, CVB-hiPSC, GM19240, HSPC, H9-hESC, GM2630, Ishikawa, GM12890, K-562, GM18526, H1-hESC, GM18951, SNYDER, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, GM19099, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, HEK293T, GM19238, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 14% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.667
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 70%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZSCAN5A, ZFX
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops