- Basic information
- CohesinDB ID: CDBP00416635
- Locus: chr21-31538834-31539637
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Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 66%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, POU2F2, SMC1A, CHD8, MYCN, POU5F1, EZH2phosphoT487, PAF1, ZFX, ZNF600, ZSCAN16, KDM4C, SMAD3, ZBTB48, STAT1, FOXA1, FOXF1, ZNF654, SRF, ERG3, XBP1, DDX5, TWIST1, TBP, ERG, SMARCC1, ZBTB2, ASCL1, ZNF341, SMARCA4, CTCFL, RAD21, SP140, NKX2-1, MAX, ZNF143, RCOR1, HAND2, ZNF736, PLAG1, MED1, MYOG, ZNF121, MYB, ETV1, SMAD1, EZH2, ESR1, NCOA1, TBX5, ZNF561, MYOD1, PHOX2B, CTCF, E4F1, NKX2-5, ZBTB7A, RBM25, SIX2, HNRNPLL, BRD4, MAZ, SMC1, STAG1, EED
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops