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Basic information

CohesinDB ID: CDBP00416650

Locus: chr21-31569967-31570343

Data sourse: GSE67783, GSE86191

Cell type: HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 67% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 69%, "14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PAX7, PGR, POU2F2, CHD8, ZNF263, POU5F1, TOP2A, SOX2, ZFX, ZNF317, XBP1, WT1, DUX4, FOXA1, ZNF770, LEO1, PRDM10, ERG, YY1, RELA, ZNF384, MYC, ZKSCAN2, ZBTB44, NKX2-1, MAX, NR3C1, TEAD1, TRIM28, TFAP2C, EZH2, OCA2, ZNF22, CTCF, BRD2, BCL11A, AR, SOX4, ZBTB42, MAZ, TEAD4, AHR

Target gene symbol (double-evidenced CRMs): TIAM1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene: ENSG00000156299,

eachgene

Deatailed information for cohesin site CDBP00416650