- Basic information
- CohesinDB ID: CDBP00416652
- Locus: chr21-31577289-31583182
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
-
Cell type: GM2610, CUTLL1, B-cell, Fibroblast, GM12890, BCBL-1, HFFc6, SNYDER, GM18505, MB157, GM12878, SK-N-SH, GM19193, MCF-7, Hela-Kyoto, HEK293T, HCAEC, OCI-AML-3, GM10847, SLK, GP5d, GM2630, HEKn, hLCL, IMR-90, GM18486, DKO, H1-hESC, Monocytes, CNCCs-H9ESC, HeLa-Tet-On, THP-1, HUES64, HeLa, BGO3, TC-71, CVB-hiPSC, CVI-hiPSC, Liver, TC-32, H9-hESC, HeLa-S3, GM2255, GM18526, Lymphoblast, GM12891, GM2588, GBM39, GM19239, RT-112, Macrophage, GM12892, HCT-116, MCF-10A, Hep-G2, Neurons-H1, HUVEC, HSPC, HAP1, MDM, RH4, GM19240, Transformed-RPE1, HuCC-T1, RPE, HMEC, Ishikawa, Kelly, K-562, Leukemia-SEM, GM19099, T-47D, HL-60, A-549, GM19238, CNCC-WT33iPSC, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 80% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.133
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 64%,
"14_ReprPCWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: POU2F2, CHD8, CEBPA, ZNF263, POU5F1, AFF4, ZFX, POU4F2, XBP1, ZSCAN16, ZNF30, MTA2, ZBTB17, SOX2, ERG3, CDK9, TRIM22, HOXB13, ZFHX2, YY1, ZBTB21, ZNF35, ZNF384, NFIC, MYC, ZFP64, ZNF184, ARNT, HIF1A, GRHL3, MAX, SP2, ZNF143, ZNF10, IKZF1, MED1, CEBPB, EZH2, LMO2, KLF9, GRHL2, EBF3, ELF3, BRD2, USF1, SPI1, BCL11A, TBX21, ZNF324, EGLN2, ELL2, IRF4, POU2F3, FLI1, ZBTB42, BRD4, MAZ, ZNF528, MRTFB, ZNF76, ZNF554, RELB, RBPJ
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 46
- Related genes and loops
- Related gene:
ENSG00000156299,
- Related loop:
chr21:30050000-30075000~~chr21:31575000-31600000,
chr21:31075000-31100000~~chr21:31575000-31600000,
chr21:31097524-31100200~~chr21:31580135-31582040,
chr21:31097635-31100206~~chr21:31579465-31582225,
chr21:31097834-31100105~~chr21:31579897-31582091,
chr21:31097840-31099933~~chr21:31580266-31581665,
chr21:31097850-31099840~~chr21:31579942-31582140,
chr21:31097852-31099834~~chr21:31580297-31581620,
chr21:31097866-31100218~~chr21:31579948-31582262,
chr21:31097877-31099898~~chr21:31579888-31581990,
chr21:31097887-31099870~~chr21:31580194-31582043,
chr21:31097892-31099900~~chr21:31580250-31582117,
chr21:31097893-31100303~~chr21:31579468-31582178,
chr21:31097906-31099678~~chr21:31579982-31581802,
chr21:31097906-31100239~~chr21:31580303-31582255,
chr21:31097941-31100177~~chr21:31580284-31581629,
chr21:31097943-31100132~~chr21:31580278-31581642,
chr21:31097962-31099613~~chr21:31580269-31582062,
chr21:31100000-31125000~~chr21:31575000-31600000,
chr21:31108237-31110143~~chr21:31579669-31582192,
chr21:31108247-31110001~~chr21:31579897-31582091,
chr21:31108300-31109854~~chr21:31579888-31581990,
chr21:31125000-31150000~~chr21:31575000-31600000,
chr21:31150000-31175000~~chr21:31575000-31600000,
chr21:31175000-31200000~~chr21:31550000-31575000,
chr21:31175000-31200000~~chr21:31575000-31600000,
chr21:31179749-31181978~~chr21:31579669-31582192,
chr21:31179837-31181523~~chr21:31580135-31582040,
chr21:31179884-31181375~~chr21:31579988-31582000,
chr21:31197303-31199956~~chr21:31579716-31582232,
chr21:31197589-31199959~~chr21:31579694-31582345,
chr21:31197601-31199886~~chr21:31579888-31581990,
chr21:31197619-31199531~~chr21:31579897-31582091,
chr21:31197637-31199884~~chr21:31579948-31582262,
chr21:31197648-31199955~~chr21:31579675-31582027,
chr21:31197650-31199906~~chr21:31579603-31582110,
chr21:31197654-31199860~~chr21:31579713-31581888,
chr21:31197655-31199851~~chr21:31579669-31582192,
chr21:31197672-31199795~~chr21:31579942-31582140,
chr21:31197672-31199906~~chr21:31579887-31581827,
chr21:31197678-31199846~~chr21:31579933-31582098,
chr21:31197682-31199946~~chr21:31579685-31582206,
chr21:31197714-31199904~~chr21:31579465-31582225,
chr21:31197715-31199809~~chr21:31580194-31582043,
chr21:31197719-31199532~~chr21:31579927-31581928,
chr21:31197719-31199951~~chr21:31580078-31581831,
chr21:31197724-31199535~~chr21:31579971-31581879,
chr21:31197728-31199477~~chr21:31579906-31582229,
chr21:31197736-31199514~~chr21:31580303-31582255,
chr21:31197737-31199840~~chr21:31579969-31582067,
chr21:31197748-31199515~~chr21:31579866-31581909,
chr21:31197752-31199500~~chr21:31579982-31582002,
chr21:31197753-31199935~~chr21:31579918-31582232,
chr21:31197755-31199442~~chr21:31580269-31582062,
chr21:31197757-31199878~~chr21:31580272-31582143,
chr21:31197757-31199907~~chr21:31579982-31581802,
chr21:31197758-31199504~~chr21:31580236-31582001,
chr21:31197763-31199891~~chr21:31579856-31582159,
chr21:31197765-31199962~~chr21:31580135-31582040,
chr21:31197767-31199871~~chr21:31580046-31581718,
chr21:31197780-31199473~~chr21:31580127-31582056,
chr21:31197780-31199925~~chr21:31580294-31582140,
chr21:31197787-31199879~~chr21:31579919-31581941,
chr21:31197799-31199453~~chr21:31580315-31581698,
chr21:31197801-31199880~~chr21:31580278-31581642,
chr21:31197807-31199502~~chr21:31580297-31581878,
chr21:31197808-31199851~~chr21:31580250-31582117,
chr21:31197869-31199761~~chr21:31580283-31581616,
chr21:31197883-31199835~~chr21:31580266-31581665,
chr21:31197888-31199879~~chr21:31580284-31581629,
chr21:31197890-31199733~~chr21:31580295-31581613,
chr21:31197901-31199794~~chr21:31580297-31581620,
chr21:31197925-31199613~~chr21:31580302-31581617,
chr21:31198011-31199951~~chr21:31579988-31582000,
chr21:31200000-31225000~~chr21:31550000-31575000,
chr21:31200000-31225000~~chr21:31575000-31600000,
chr21:31212839-31214885~~chr21:31579465-31582225,
chr21:31212886-31214857~~chr21:31579694-31582345,
chr21:31213123-31214793~~chr21:31579969-31582067,
chr21:31213256-31214845~~chr21:31579856-31582159,
chr21:31213266-31214844~~chr21:31579669-31582192,
chr21:31213366-31214803~~chr21:31579971-31581879,
chr21:31218191-31220098~~chr21:31579468-31582178,
chr21:31225000-31250000~~chr21:31575000-31600000,
chr21:31250000-31275000~~chr21:31575000-31600000,
chr21:31300000-31325000~~chr21:31575000-31600000,
chr21:31325000-31350000~~chr21:31550000-31575000,
chr21:31325000-31350000~~chr21:31575000-31600000,
chr21:31346686-31348373~~chr21:31579897-31582091,
chr21:31346702-31348424~~chr21:31579918-31582232,
chr21:31346706-31348459~~chr21:31579866-31581909,
chr21:31350000-31375000~~chr21:31550000-31575000,
chr21:31375000-31400000~~chr21:31575000-31600000,
chr21:31400000-31425000~~chr21:31575000-31600000,
chr21:31450000-31475000~~chr21:31550000-31575000,
chr21:31450000-31475000~~chr21:31575000-31600000,
chr21:31458665-31460618~~chr21:31579948-31582262,
chr21:31475000-31500000~~chr21:31575000-31600000,
chr21:31498536-31499888~~chr21:31579669-31582192,
chr21:31498552-31499739~~chr21:31580295-31581613,
chr21:31498554-31500056~~chr21:31579918-31582232,
chr21:31537075-31538694~~chr21:31579918-31582232,