- Basic information
- CohesinDB ID: CDBP00416654
- Locus: chr21-31586933-31587272
-
Data sourse: GSE206145, GSE67783
-
Cell type: RPE, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 80%,
"14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000156299,
- Related loop:
chr21:30050000-30075000~~chr21:31575000-31600000,
chr21:31075000-31100000~~chr21:31575000-31600000,
chr21:31097524-31100200~~chr21:31580135-31582040,
chr21:31097635-31100206~~chr21:31579465-31582225,
chr21:31097834-31100105~~chr21:31579897-31582091,
chr21:31097850-31099840~~chr21:31579942-31582140,
chr21:31097866-31100218~~chr21:31579948-31582262,
chr21:31097877-31099898~~chr21:31579888-31581990,
chr21:31097887-31099870~~chr21:31580194-31582043,
chr21:31097892-31099900~~chr21:31580250-31582117,
chr21:31097893-31100303~~chr21:31579468-31582178,
chr21:31097906-31100239~~chr21:31580303-31582255,
chr21:31097962-31099613~~chr21:31580269-31582062,
chr21:31100000-31125000~~chr21:31575000-31600000,
chr21:31108237-31110143~~chr21:31579669-31582192,
chr21:31108247-31110001~~chr21:31579897-31582091,
chr21:31108300-31109854~~chr21:31579888-31581990,
chr21:31125000-31150000~~chr21:31575000-31600000,
chr21:31150000-31175000~~chr21:31575000-31600000,
chr21:31175000-31200000~~chr21:31575000-31600000,
chr21:31179749-31181978~~chr21:31579669-31582192,
chr21:31179837-31181523~~chr21:31580135-31582040,
chr21:31179884-31181375~~chr21:31579988-31582000,
chr21:31197303-31199956~~chr21:31579716-31582232,
chr21:31197589-31199959~~chr21:31579694-31582345,
chr21:31197601-31199886~~chr21:31579888-31581990,
chr21:31197619-31199531~~chr21:31579897-31582091,
chr21:31197637-31199884~~chr21:31579948-31582262,
chr21:31197648-31199955~~chr21:31579675-31582027,
chr21:31197650-31199906~~chr21:31579603-31582110,
chr21:31197655-31199851~~chr21:31579669-31582192,
chr21:31197672-31199795~~chr21:31579942-31582140,
chr21:31197678-31199846~~chr21:31579933-31582098,
chr21:31197682-31199946~~chr21:31579685-31582206,
chr21:31197714-31199904~~chr21:31579465-31582225,
chr21:31197715-31199809~~chr21:31580194-31582043,
chr21:31197728-31199477~~chr21:31579906-31582229,
chr21:31197736-31199514~~chr21:31580303-31582255,
chr21:31197737-31199840~~chr21:31579969-31582067,
chr21:31197752-31199500~~chr21:31579982-31582002,
chr21:31197753-31199935~~chr21:31579918-31582232,
chr21:31197755-31199442~~chr21:31580269-31582062,
chr21:31197757-31199878~~chr21:31580272-31582143,
chr21:31197758-31199504~~chr21:31580236-31582001,
chr21:31197763-31199891~~chr21:31579856-31582159,
chr21:31197765-31199962~~chr21:31580135-31582040,
chr21:31197780-31199473~~chr21:31580127-31582056,
chr21:31197780-31199925~~chr21:31580294-31582140,
chr21:31197787-31199879~~chr21:31579919-31581941,
chr21:31197808-31199851~~chr21:31580250-31582117,
chr21:31198011-31199951~~chr21:31579988-31582000,
chr21:31200000-31225000~~chr21:31575000-31600000,
chr21:31212839-31214885~~chr21:31579465-31582225,
chr21:31212886-31214857~~chr21:31579694-31582345,
chr21:31213123-31214793~~chr21:31579969-31582067,
chr21:31213256-31214845~~chr21:31579856-31582159,
chr21:31213266-31214844~~chr21:31579669-31582192,
chr21:31218191-31220098~~chr21:31579468-31582178,
chr21:31225000-31250000~~chr21:31575000-31600000,
chr21:31250000-31275000~~chr21:31575000-31600000,
chr21:31300000-31325000~~chr21:31575000-31600000,
chr21:31325000-31350000~~chr21:31575000-31600000,
chr21:31346686-31348373~~chr21:31579897-31582091,
chr21:31346702-31348424~~chr21:31579918-31582232,
chr21:31375000-31400000~~chr21:31575000-31600000,
chr21:31400000-31425000~~chr21:31575000-31600000,
chr21:31450000-31475000~~chr21:31575000-31600000,
chr21:31458665-31460618~~chr21:31579948-31582262,
chr21:31475000-31500000~~chr21:31575000-31600000,
chr21:31498536-31499888~~chr21:31579669-31582192,
chr21:31498554-31500056~~chr21:31579918-31582232,
chr21:31537075-31538694~~chr21:31579918-31582232,