- Basic information
- CohesinDB ID: CDBP00416656
- Locus: chr21-31590766-31591474
-
Data sourse: GSE67783, GSE86191
-
Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 76%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF121, ZFX
- Target gene symbol (double-evidenced CRMs): TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000156299,
- Related loop:
chr21:30050000-30075000~~chr21:31575000-31600000,
chr21:31075000-31100000~~chr21:31575000-31600000,
chr21:31100000-31125000~~chr21:31575000-31600000,
chr21:31125000-31150000~~chr21:31575000-31600000,
chr21:31150000-31175000~~chr21:31575000-31600000,
chr21:31175000-31200000~~chr21:31575000-31600000,
chr21:31200000-31225000~~chr21:31575000-31600000,
chr21:31225000-31250000~~chr21:31575000-31600000,
chr21:31250000-31275000~~chr21:31575000-31600000,
chr21:31300000-31325000~~chr21:31575000-31600000,
chr21:31325000-31350000~~chr21:31575000-31600000,
chr21:31375000-31400000~~chr21:31575000-31600000,
chr21:31400000-31425000~~chr21:31575000-31600000,
chr21:31450000-31475000~~chr21:31575000-31600000,
chr21:31475000-31500000~~chr21:31575000-31600000,