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Basic information

CohesinDB ID: CDBP00416657

Locus: chr21-31592529-31593423

Data sourse: ENCSR230ZWH, ENCSR198ZYJ, ENCSR917QNE

Cell type: Neurons-H1, Liver

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 67% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 67%, "14_ReprPCWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CBFA2T2, FOXA2, NKX2-2, CEBPA, BRD3, SOX13, ID3, SOX2, RBPJ, POU4F2, ZNF692, ZFX, XBP1, FOXA1, ERG3, ARID3A, CDK9, ERG2, HNF4G, KDM1A, YY1, RFX1, RAD21, ARNT, RXRA, ZNF614, MAX, NKX3-1, ZNF143, PRDM14, NR2F6, MED1, ARNTL, CBX2, ZFP69B, TEAD1, EZH2, ZBTB6, MED26, KLF9, CTCF, SP1, BCL11A, HNF4A, SOX5, NKX2-5, REST, NOTCH3, BRD4, ZNF490, RELB, SMC3, GATAD2A, AHR

Target gene symbol (double-evidenced CRMs): TIAM1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 7

Related genes and loops

Related gene: ENSG00000156299,

eachgene

Deatailed information for cohesin site CDBP00416657