- Basic information
- CohesinDB ID: CDBP00416660
- Locus: chr21-31601897-31607562
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, GSE130140, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE132649, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE38395, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE155828, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: GM2610, CUTLL1, B-cell, Fibroblast, GM12890, BCBL-1, HFFc6, SNYDER, GM18505, MB157, GM12878, SK-N-SH, GM19193, Ramos, MCF-7, Hela-Kyoto, HEK293T, HCAEC, OCI-AML-3, GM10847, SLK, GP5d, GM2630, HEKn, hLCL, IMR-90, GM18486, DKO, H1-hESC, Monocytes, CNCCs-H9ESC, HeLa-Tet-On, THP-1, HUES64, HeLa, Neutrophil, CVB-hiPSC, CVI-hiPSC, Liver, TC-32, H9-hESC, HeLa-S3, GM2255, GM18526, Lymphoblast, GM12891, GM2588, GBM39, GM19239, RT-112, Macrophage, GM12892, HCT-116, MCF-10A, Hep-G2, Neurons-H1, HUVEC, HSPC, HAP1, MDM, RH4, GM19240, Transformed-RPE1, HuCC-T1, RPE, HMEC, Ishikawa, Kelly, K-562, Leukemia-SEM, HUES9, GM19099, T-47D, HL-60, A-549, GM19238, CNCC-WT33iPSC, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 78% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.122
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 67%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF384, KLF4, ZNF283, GATA1, POU5F1, ZFX, PRDM1, GRHL3, TP53, BRD4, USF1
- Target gene symbol (double-evidenced CRMs): TIAM1,HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 31
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000142149,
- Related loop:
chr21:29075000-29100000~~chr21:31600000-31625000,
chr21:30025000-30050000~~chr21:31600000-31625000,
chr21:30050000-30075000~~chr21:31575000-31600000,
chr21:30050000-30075000~~chr21:31600000-31625000,
chr21:30325000-30350000~~chr21:31600000-31625000,
chr21:30425000-30450000~~chr21:31600000-31625000,
chr21:30825000-30850000~~chr21:31600000-31625000,
chr21:30830642-30832041~~chr21:31603800-31605717,
chr21:30830671-30832343~~chr21:31603478-31605998,
chr21:30838921-30840264~~chr21:31603607-31605876,
chr21:30875000-30900000~~chr21:31600000-31625000,
chr21:30950000-30975000~~chr21:31600000-31625000,
chr21:31075000-31100000~~chr21:31575000-31600000,
chr21:31075000-31100000~~chr21:31600000-31625000,
chr21:31097524-31100200~~chr21:31603561-31606243,
chr21:31097635-31100206~~chr21:31603602-31605948,
chr21:31097659-31100122~~chr21:31603531-31606025,
chr21:31097662-31099856~~chr21:31603619-31605810,
chr21:31097665-31099883~~chr21:31603773-31605883,
chr21:31097685-31100223~~chr21:31603435-31606015,
chr21:31097693-31099837~~chr21:31603761-31605998,
chr21:31097698-31099915~~chr21:31603571-31605761,
chr21:31097703-31099820~~chr21:31603740-31605904,
chr21:31097825-31099965~~chr21:31604036-31605562,
chr21:31097828-31099837~~chr21:31603469-31605983,
chr21:31097834-31100105~~chr21:31603560-31606026,
chr21:31097840-31099933~~chr21:31604013-31605728,
chr21:31097840-31099938~~chr21:31603779-31605751,
chr21:31097847-31099741~~chr21:31603808-31605732,
chr21:31097852-31099834~~chr21:31603977-31605609,
chr21:31097852-31100234~~chr21:31603563-31605907,
chr21:31097866-31100218~~chr21:31603484-31605864,
chr21:31097869-31099852~~chr21:31603478-31605998,
chr21:31097870-31099669~~chr21:31603921-31605829,
chr21:31097873-31099839~~chr21:31603801-31605813,
chr21:31097877-31099898~~chr21:31603659-31605983,
chr21:31097883-31100039~~chr21:31603595-31606017,
chr21:31097887-31099865~~chr21:31603607-31605876,
chr21:31097887-31099866~~chr21:31603648-31605747,
chr21:31097893-31100303~~chr21:31603591-31605976,
chr21:31097894-31099945~~chr21:31603826-31605735,
chr21:31097896-31099782~~chr21:31603800-31605717,
chr21:31097903-31099685~~chr21:31603616-31605759,
chr21:31097906-31099678~~chr21:31603705-31605771,
chr21:31097906-31100239~~chr21:31603767-31606045,
chr21:31097923-31099913~~chr21:31603790-31605769,
chr21:31097936-31099894~~chr21:31603758-31605876,
chr21:31097941-31100177~~chr21:31603985-31605548,
chr21:31097943-31100132~~chr21:31604008-31605560,
chr21:31098003-31099384~~chr21:31604127-31605513,
chr21:31098023-31099887~~chr21:31604024-31605520,
chr21:31100000-31125000~~chr21:31575000-31600000,
chr21:31100000-31125000~~chr21:31600000-31625000,
chr21:31108225-31109947~~chr21:31603740-31605904,
chr21:31108247-31110001~~chr21:31603560-31606026,
chr21:31108302-31109934~~chr21:31603591-31605976,
chr21:31108349-31109945~~chr21:31603460-31605984,
chr21:31108376-31109926~~chr21:31603651-31605924,
chr21:31108400-31109986~~chr21:31612358-31613962,
chr21:31108420-31109889~~chr21:31603648-31605747,
chr21:31125000-31150000~~chr21:31575000-31600000,
chr21:31150000-31175000~~chr21:31575000-31600000,
chr21:31175000-31200000~~chr21:31575000-31600000,
chr21:31175000-31200000~~chr21:31600000-31625000,
chr21:31179704-31181750~~chr21:31603484-31605864,
chr21:31179749-31181978~~chr21:31603531-31606025,
chr21:31179770-31181885~~chr21:31603563-31605907,
chr21:31197237-31199506~~chr21:31603761-31605998,
chr21:31197303-31199956~~chr21:31603460-31605984,
chr21:31197589-31199959~~chr21:31603435-31606015,
chr21:31197601-31199886~~chr21:31603659-31605983,
chr21:31197619-31199531~~chr21:31603560-31606026,
chr21:31197637-31199884~~chr21:31603484-31605864,
chr21:31197648-31199955~~chr21:31603571-31605761,
chr21:31197650-31199906~~chr21:31603651-31605924,
chr21:31197654-31199860~~chr21:31603573-31605798,
chr21:31197655-31199851~~chr21:31603531-31606025,
chr21:31197672-31199906~~chr21:31603773-31605883,
chr21:31197678-31199846~~chr21:31603607-31605876,
chr21:31197682-31199946~~chr21:31603563-31605907,
chr21:31197714-31199904~~chr21:31603602-31605948,
chr21:31197715-31199809~~chr21:31603496-31605683,
chr21:31197719-31199532~~chr21:31603914-31605899,
chr21:31197724-31199535~~chr21:31603800-31605717,
chr21:31197729-31199566~~chr21:31603591-31605976,
chr21:31197736-31199514~~chr21:31603767-31606045,
chr21:31197737-31199840~~chr21:31603478-31605998,
chr21:31197748-31199515~~chr21:31603808-31605732,
chr21:31197752-31199500~~chr21:31603826-31605735,
chr21:31197753-31199935~~chr21:31603595-31606017,
chr21:31197755-31199442~~chr21:31603818-31605771,
chr21:31197756-31199452~~chr21:31603885-31605723,
chr21:31197757-31199878~~chr21:31603790-31605769,
chr21:31197757-31199907~~chr21:31603705-31605771,
chr21:31197763-31199891~~chr21:31603469-31605983,
chr21:31197765-31199962~~chr21:31603561-31606243,
chr21:31197780-31199473~~chr21:31603619-31605810,
chr21:31197780-31199925~~chr21:31603801-31605813,
chr21:31197787-31199879~~chr21:31603591-31605843,
chr21:31197801-31199880~~chr21:31604008-31605560,
chr21:31197807-31199502~~chr21:31604014-31605561,
chr21:31197808-31199851~~chr21:31603762-31606023,
chr21:31197818-31199455~~chr21:31603899-31605786,
chr21:31197883-31199835~~chr21:31604013-31605728,
chr21:31197888-31199879~~chr21:31603985-31605548,
chr21:31197890-31199733~~chr21:31604000-31605577,
chr21:31197901-31199794~~chr21:31603977-31605609,
chr21:31197910-31199531~~chr21:31603902-31605637,
chr21:31197925-31199613~~chr21:31604024-31605520,
chr21:31197954-31199538~~chr21:31604063-31605499,
chr21:31198011-31199951~~chr21:31603779-31605751,
chr21:31198078-31199477~~chr21:31603567-31605676,
chr21:31200000-31225000~~chr21:31575000-31600000,
chr21:31200000-31225000~~chr21:31600000-31625000,
chr21:31212839-31214885~~chr21:31603602-31605948,
chr21:31213183-31214841~~chr21:31603798-31605786,
chr21:31213256-31214845~~chr21:31603469-31605983,
chr21:31213437-31214794~~chr21:31603705-31605771,
chr21:31213444-31214691~~chr21:31603818-31605771,
chr21:31225000-31250000~~chr21:31575000-31600000,
chr21:31250000-31275000~~chr21:31575000-31600000,
chr21:31250000-31275000~~chr21:31600000-31625000,
chr21:31300000-31325000~~chr21:31575000-31600000,
chr21:31325000-31350000~~chr21:31575000-31600000,
chr21:31325000-31350000~~chr21:31600000-31625000,
chr21:31346790-31348380~~chr21:31604014-31605561,
chr21:31375000-31400000~~chr21:31575000-31600000,
chr21:31400000-31425000~~chr21:31575000-31600000,
chr21:31450000-31475000~~chr21:31575000-31600000,
chr21:31450000-31475000~~chr21:31600000-31625000,
chr21:31475000-31500000~~chr21:31575000-31600000,
chr21:31498536-31499888~~chr21:31603531-31606025,
chr21:31600000-31625000~~chr21:31950000-31975000,