Browse_each

Basic information

CohesinDB ID: CDBP00416666

Locus: chr21-31620281-31621249

Data sourse: GSE105028, GSE67783

Cell type: HSPC, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 67% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 89%, "14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, POU5F1, RAD21, ZFX, MAZ, CTCF

Target gene symbol (double-evidenced CRMs): HUNK,TIAM1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000156299, ENSG00000142149,

Tools:

Assay

refGene

Ruler

Cohesin site CDBP00416666

CDBP00416666 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00416666

Current terms

Suggested terms

Custom term