- Basic information
- CohesinDB ID: CDBP00416667
- Locus: chr21-31621827-31622105
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Data sourse: GSE206145-NatGen2015, ENCSR153HNT
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Cell type: K-562, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 90%,
"14_ReprPCWk": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TIAM1,HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000142149,
- Related loop:
chr21:29075000-29100000~~chr21:31600000-31625000,
chr21:30025000-30050000~~chr21:31600000-31625000,
chr21:30050000-30075000~~chr21:31600000-31625000,
chr21:30325000-30350000~~chr21:31600000-31625000,
chr21:30425000-30450000~~chr21:31600000-31625000,
chr21:30825000-30850000~~chr21:31600000-31625000,
chr21:30875000-30900000~~chr21:31600000-31625000,
chr21:30950000-30975000~~chr21:31600000-31625000,
chr21:31075000-31100000~~chr21:31600000-31625000,
chr21:31100000-31125000~~chr21:31600000-31625000,
chr21:31175000-31200000~~chr21:31600000-31625000,
chr21:31200000-31225000~~chr21:31600000-31625000,
chr21:31250000-31275000~~chr21:31600000-31625000,
chr21:31325000-31350000~~chr21:31600000-31625000,
chr21:31450000-31475000~~chr21:31600000-31625000,
chr21:31600000-31625000~~chr21:31950000-31975000,
chr21:31622539-31624965~~chr21:31682614-31683831,
chr21:31622545-31624738~~chr21:31658893-31661227,
chr21:31622573-31624872~~chr21:31665039-31666300,
chr21:31622589-31624532~~chr21:31873410-31874559,
chr21:31622590-31624578~~chr21:31865202-31867213,
chr21:31622590-31624578~~chr21:32257174-32259289,
chr21:31622890-31624815~~chr21:32257354-32259325,
chr21:31622928-31624476~~chr21:31665036-31666246,
chr21:31623232-31624461~~chr21:31785309-31786753,