- Basic information
- CohesinDB ID: CDBP00416668
- Locus: chr21-31623474-31624174
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Data sourse: ENCSR000BLD, ENCSR230ZWH, ENCSR000FAD, GSE72082, ENCSR000BSB, GSE126634, ENCSR000BLY, GSE105028, GSE121355, GSE131606, GSE25021, ENCSR000BUC, ENCSR917QNE, ENCSR000BTU, GSE93080, ENCSR000DZP, ENCSR000EAC, GSE143937, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE101921, GSE152721, GSE206145-NatGen2015, GSE130135, GSE116344, GSE106870, GSE145327, GSE94872, ENCSR193NSH, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR000BMY, ENCSR000EHX, GSE97394, ENCSR167MTG, ENCSR853VWZ, GSE110061, GSE129526, GSE155324, ENCSR054FKH, GSE68388, GSE83726, GSE126990, GSE50893
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Cell type: RH4, GM10847, GM2610, CVB-hiPSC, GM19240, Liver, HuCC-T1, H9-hESC, RPE, GM2630, HMEC, Fibroblast, Ishikawa, GM12890, GM2255, K-562, GM18486, DKO, GM18526, H1-hESC, SNYDER, GM18505, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, GM19193, HAP1, GM19099, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, A-549, HUVEC, HCAEC, GM19238, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 24% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.511
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, POU2F2, CHD8, SMC1A, CBX5, POU5F1, CDK7, RUNX1T1, ZFX, POU4F2, ZSCAN16, XBP1, GTF2B, TOP2A, STAT1, FOXA1, STAG2, ERG3, SOX2, CDK9, ERG2, HOXB13, ERG, CREB3L1, ZBTB2, ZNF35, ZNF384, LYL1, MYC, CDK6, SMARCA4, CTCFL, RAD21, PRDM1, GRHL3, ARNT, GATA3, GABPA, TAL1, PAX5, NRIP1, GATA1, CDK8, ZNF143, ARNTL, NCOA3, NR2F2, TRIM28, MYB, ZNF512, ZNF680, KMT2A, EZH2, LMO2, ESR1, TFAP2C, OCA2, C11orf30, STAG1, ZNF652, EGR2, CTCF, SPI1, BCL11A, ARID5B, LMO1, AR, IRF1, ZBTB16, GATA2, ZNF324, ZNF366, RNF2, BRD4, ILF3, ZNF528, MLLT1, ZNF316
- Target gene symbol (double-evidenced CRMs): SOD1,HUNK,SCAF4,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000142168,
ENSG00000156304,
ENSG00000142149,
- Related loop:
chr21:29075000-29100000~~chr21:31600000-31625000,
chr21:30025000-30050000~~chr21:31600000-31625000,
chr21:30050000-30075000~~chr21:31600000-31625000,
chr21:30325000-30350000~~chr21:31600000-31625000,
chr21:30425000-30450000~~chr21:31600000-31625000,
chr21:30825000-30850000~~chr21:31600000-31625000,
chr21:30875000-30900000~~chr21:31600000-31625000,
chr21:30950000-30975000~~chr21:31600000-31625000,
chr21:31075000-31100000~~chr21:31600000-31625000,
chr21:31100000-31125000~~chr21:31600000-31625000,
chr21:31175000-31200000~~chr21:31600000-31625000,
chr21:31200000-31225000~~chr21:31600000-31625000,
chr21:31250000-31275000~~chr21:31600000-31625000,
chr21:31325000-31350000~~chr21:31600000-31625000,
chr21:31450000-31475000~~chr21:31600000-31625000,
chr21:31600000-31625000~~chr21:31950000-31975000,
chr21:31622539-31624965~~chr21:31682614-31683831,
chr21:31622545-31624738~~chr21:31658893-31661227,
chr21:31622573-31624872~~chr21:31665039-31666300,
chr21:31622589-31624532~~chr21:31873410-31874559,
chr21:31622590-31624578~~chr21:31865202-31867213,
chr21:31622590-31624578~~chr21:32257174-32259289,
chr21:31622890-31624815~~chr21:32257354-32259325,
chr21:31622928-31624476~~chr21:31665036-31666246,
chr21:31623232-31624461~~chr21:31785309-31786753,