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Basic information

CohesinDB ID: CDBP00416669

Locus: chr21-31624761-31625676

Data sourse: GSE67783, ENCSR230ZWH, GSE86191, ENCSR917QNE

Cell type: Liver, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 67% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 82%, "14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, SMC1A, PGR, CEBPA, FOXA2, TBL1X, MYCN, ZFX, XBP1, WT1, ZSCAN5A, FOXA1, ZBTB33, HNF4G, KDM1A, YY1, RELA, ZNF384, ATF3, ONECUT1, RAD21, SP140, RXRA, GABPA, MAX, XRCC5, NRIP1, HNRNPH1, PLAG1, CEBPB, TEAD3, NR2F2, ZNF3, ESR1, OCA2, USF2, CTCF, USF1, SP1, HNF4A, AR, REST, EGR1, ZBTB26, JUND, MAZ

Target gene symbol (double-evidenced CRMs): SOD1,HUNK,SCAF4,TIAM1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 5

Related genes and loops

Related gene: ENSG00000156299, ENSG00000142168, ENSG00000156304, ENSG00000142149,

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Deatailed information for cohesin site CDBP00416669