- Basic information
- CohesinDB ID: CDBP00416676
- Locus: chr21-31648123-31648567
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Data sourse: GSE206145-NatGen2015, ENCSR153HNT, GSE86191
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Cell type: K-562, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 87%,
"14_ReprPCWk": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, POU2F2, MEF2B, BCL6, ZNF316, EBF1, TOP2A, ZFX, ZNF317, GTF2B, XBP1, WT1, ZBTB48, ARID3A, CDK9, ERG2, TBP, YY1, MEF2A, CREBBP, RELA, ZNF384, AHR, MYC, RUNX3, ZFP36, ATF4, GABPA, ZNF143, IKZF1, TERF2, MED1, ARNTL, TERF1, BCLAF1, EZH2, OCA2, CTCF, SP1, SPI1, TBX21, BCL11A, IRF4, ASH2L, BRD4, BCOR, RELB, NCOR2, RBPJ, EED
- Target gene symbol (double-evidenced CRMs): SOD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops