- Basic information
- CohesinDB ID: CDBP00416678
- Locus: chr21-31653945-31655332
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Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE105028, ShirahigeLab-NatGen2015, ENCSR000ECE, ShirahigeLab, ENCSR153HNT, GSE25021
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Cell type: MCF-7, H1-hESC, RPE, Fibroblast, HCT-116, K-562, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 65%,
"1_TssA": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MAF1, OGG1, SMC1A, ATF3, REST, ZFX, GRHL3, BRD4, CBFB, AATF, STAT3, CTCF, ERG
- Target gene symbol (double-evidenced CRMs): SOD1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops