- Basic information
- CohesinDB ID: CDBP00416693
- Locus: chr21-31685889-31686857
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Data sourse: GSE126634, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HAP1, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 83%,
"5_TxWk": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, FOXA2, ZNF263, PAF1, ZFX, ZSCAN21, WT1, PCBP2, DUX4, FOXA1, ZSCAN5A, ZBTB33, ERG3, DDX5, ERG2, LEO1, ZFHX2, ZKSCAN1, HNRNPK, YY1, RELA, ZNF384, ZNF35, NEUROD1, MYC, ZNF362, TCF4, OTX2, GATA3, GLYR1, TP63, SUPT5H, ZNF143, ZNF467, KLF4, NR3C1, CEBPB, TEAD1, HNRNPL, RBM39, SCRT2, EZH2, ESR1, OCA2, ZBTB6, ZSCAN22, EGR2, ZNF22, CTCF, RBM22, ZNF664, AR, PCBP1, HDAC2, DPF2, E2F6, BRD4, SCRT1, TEAD4, ZNF92, ZZZ3, ZNF316
- Target gene symbol (double-evidenced CRMs): SYNJ1,PAXBP1,SCAF4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 24
- Number of somatic mutations (non-coding): 8
- Related genes and loops