- Basic information
- CohesinDB ID: CDBP00416698
- Locus: chr21-31706429-31706648
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 71%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, FOXA2, PAF1, POU4F2, ZBTB48, WT1, FOXA1, FOXF1, LEO1, ERG, YY1, RELA, HDGF, MYC, SP140, GRHL3, PRDM1, PRDM9, TAL1, SUPT5H, AGO2, GATA1, MED1, NR2F1, EZH2, KDM5B, OCA2, FEZF1, RBM22, ZNF324, HSF1, NOTCH3, BRD4, MAZ, RELB, TEAD4, AHR
- Target gene symbol (double-evidenced CRMs): TIAM1,SCAF4,SYNJ1,CFAP298,CFAP298-TCP10L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 1
- Related genes and loops