Deatailed information for cohesin site CDBP00416702


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  • Basic information
  • CohesinDB ID: CDBP00416702
  • Locus: chr21-31711898-31712847
  • Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE138405, GSE206145, GSE206145-NatGen2015, GSE126990
  • Cell type: RPE, H1-hESC, Fibroblast, HCT-116, Hela-Kyoto, HSPC
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 2% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.933
  • Subunit: SA1,Rad21,SA2
  • CTCF binding site: CTCF CTCF motif: False
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 67% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): False
  • Chromatin annotation: "5_TxWk": 62%, "7_Enh": 19%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: MEF2B, MEIS2, ZNF600, MAFF, FOXA1, ZBTB33, PBX2, HOXB13, PRDM10, KDM1A, ERG, ZNF384, RUNX2, MYC, PRDM1, PBX4, OTX2, GATA3, GABPA, STAT3, GATA1, SUPT5H, RCOR1, FOS, CEBPB, SCRT2, ZMYM3, PKNOX1, PHOX2B, JUN, RBM22, EP300, AR, GATA2, RXR, RBM25, SCRT1, PHIP, BCOR, PRDM6, ZNF92, ADNP
  • Target gene symbol (double-evidenced CRMs): SYNJ1,CFAP298,CFAP298-TCP10L,TIAM1,SCAF4
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 30
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops

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