- Basic information
- CohesinDB ID: CDBP00416702
- Locus: chr21-31711898-31712847
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Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE138405, GSE206145, GSE206145-NatGen2015, GSE126990
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Cell type: RPE, H1-hESC, Fibroblast, HCT-116, Hela-Kyoto, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 62%,
"7_Enh": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MEF2B, MEIS2, ZNF600, MAFF, FOXA1, ZBTB33, PBX2, HOXB13, PRDM10, KDM1A, ERG, ZNF384, RUNX2, MYC, PRDM1, PBX4, OTX2, GATA3, GABPA, STAT3, GATA1, SUPT5H, RCOR1, FOS, CEBPB, SCRT2, ZMYM3, PKNOX1, PHOX2B, JUN, RBM22, EP300, AR, GATA2, RXR, RBM25, SCRT1, PHIP, BCOR, PRDM6, ZNF92, ADNP
- Target gene symbol (double-evidenced CRMs): SYNJ1,CFAP298,CFAP298-TCP10L,TIAM1,SCAF4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 30
- Number of somatic mutations (non-coding): 0
- Related genes and loops