- Basic information
- CohesinDB ID: CDBP00416703
- Locus: chr21-31713383-31713742
-
Data sourse: GSE206145, GSE206145-NatGen2015
-
Cell type: RPE, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 52%,
"7_Enh": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOSL1, PGR, ZSCAN5C, SOX2, MEIS2, FOXA1, HLF, PBX2, HDGF, ATF3, NFIC, CHD7, PRDM1, IKZF3, ZNF189, SMARCE1, TP63, ZSCAN4, BACH2, KLF5, TRIM28, NFE2L2, TP73, PITX3, CTCF, TCF12, JUN, BAF155, E4F1, EP300, MNT, SOX5, GATA6, DPF2, TRIM24, IRF4, SOX6, RAD51, DDX20, E2F1, TEAD4, GATAD2A, EHMT2, RBPJ, GLIS1, NANOG, POU5F1, BRD3, CTBP1, MTA2, ZBTB17, ZBTB48, ZNF317, ZSCAN21, DUX4, SRF, NBN, ARID3A, ERG, MIER1, SMARCC2, MYC, ONECUT1, SMARCA4, EOMES, ARID1B, RXRA, FOXK2, BATF3, NKX3-1, IKZF1, LEF1, NFE2, ZNF639, NFRKB, RCOR1, NR2F6, NR3C1, CEBPB, CREB1, TBL1XR1, EZH2, NFE2L1, SPI1, ZNF664, HDAC2, GATA2, ZSCAN29, FLI1, SMARCA5, MRTFB, NFIL3, ATF1, RUNX1, ZNF585A, MAFG, HDAC1, LDB1, CEBPA, SMAD3, ZBTB2, ZNF384, BRD9, RUNX2, CDK6, GATA4, OSR2, ZNF184, PBX4, ARNT, NRF1, SOX11, ATF2, HMBOX1, ZEB2, PBX3, FOXM1, CBFA2T3, SUPT5H, FOS, SMARCB1, CHD1, GMEB1, TERF1, CEBPD, ZNF680, PIAS1, ZMYM3, NCOA1, C11orf30, STAT5A, NUP98-HOXA9, RBM22, MAFK, BCL11A, HNF4A, REST, ARID1A, ZBTB7A, RBM25, ATF7, POU2F3, ASH2L, HOXA9, PHIP, BCOR, FOXP1, PRDM6, MLLT1, NFATC3, ZNF394, CBFA2T2, MEF2B, FOXA2, CBX3, ZNF207, CREM, PAF1, EBF1, ZNF600, ZNF692, GTF2B, MAFF, ZSCAN16, ZBTB33, CDK9, HOXB13, KDM1A, YY1, RELA, ZNF19, NEUROD1, ZNF148, JUNB, BRG1, BRCA1, ISL1, OTX2, GATA3, BATF, TAL1, ZNF740, MAX, GATA1, AGO2, HAND2, TLE3, ZNF592, SP7, NR2F2, NR2F1, TP53, PKNOX1, ZBTB6, PHOX2B, T, AR, ZBTB40, ZNF366, EGR1, NCOR1, RNF2, BRD4, ILF3, JUND, CLOCK, ZNF24, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): SCAF4,CFAP298,TIAM1,SYNJ1,CFAP298-TCP10L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops