- Basic information
- CohesinDB ID: CDBP00416716
- Locus: chr21-31739215-31739559
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Data sourse: ENCSR000BLD, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: K-562, H1-hESC, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 96%,
"7_Enh": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: EGR1, SP140, ZBTB48, WT1, ZBTB33
- Target gene symbol (double-evidenced CRMs): TIAM1,CFAP298-TCP10L,MIS18A,CFAP298,PAXBP1,HUNK,SYNJ1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000142149,
ENSG00000159055,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
ENSG00000159086,
- Related loop:
chr21:31250000-31275000~~chr21:31725000-31750000,
chr21:31725000-31750000~~chr21:31850000-31875000,
chr21:31725000-31750000~~chr21:31950000-31975000,
chr21:31725000-31750000~~chr21:32250000-32275000,
chr21:31725000-31750000~~chr21:32575000-32600000,
chr21:31725000-31750000~~chr21:32600000-32625000,
chr21:31725000-31750000~~chr21:32750000-32775000,
chr21:31725000-31750000~~chr21:36975000-37000000,
chr21:31731849-31734483~~chr21:31771972-31774192,