- Basic information
- CohesinDB ID: CDBP00416717
- Locus: chr21-31744136-31744783
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 74%,
"9_Het": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SKI, CBX5, CBX1, MEF2B, CBX3, POU5F1, CEBPA, SMC1A, EBF1, ZFX, RUNX1T1, ZNF317, XBP1, ZBTB33, MEF2C, MLL4, KDM1A, TFAP4, ERG, HDGF, PBX1, ATF3, RUNX2, TRIP13, SMARCA4, NR3C1, ARID1B, RUNX3, ARNT, ATF4, CBFB, FOXK2, GATA3, PGR, ZNF143, CDK8, MED1, VDR, CEBPG, ZNF592, CEBPB, JMJD1C, ESRRA, TRIM28, MYB, KMT2A, NR2F1, ZMYM3, MLLT1, LMO2, TP53, ESR1, TP73, MLL, MED, SETDB1, EVI1, CTCF, BCL11A, SPI1, AR, DPF2, HDAC2, RXR, TRIM24, ZNF605, BRD4, SMARCA5, BCOR, TCF3, ZNF350, ZNF280A, TEAD4, KMT2B, ZNF24, EHMT2, ZNF316
- Target gene symbol (double-evidenced CRMs): CFAP298-TCP10L,SYNJ1,MIS18A,TIAM1,HUNK,PAXBP1,CFAP298
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000142149,
ENSG00000159055,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
ENSG00000159086,
- Related loop:
chr21:31250000-31275000~~chr21:31725000-31750000,
chr21:31725000-31750000~~chr21:31850000-31875000,
chr21:31725000-31750000~~chr21:31950000-31975000,
chr21:31725000-31750000~~chr21:32250000-32275000,
chr21:31725000-31750000~~chr21:32575000-32600000,
chr21:31725000-31750000~~chr21:32600000-32625000,
chr21:31725000-31750000~~chr21:32750000-32775000,
chr21:31725000-31750000~~chr21:36975000-37000000,