Browse_each

Basic information

CohesinDB ID: CDBP00416718

Locus: chr21-31745048-31745345

Data sourse: GSE206145, GSE206145-NatGen2015

Cell type: RPE, Fibroblast

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 67% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 73%, "9_Het": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, SKI, CBX5, CBX1, MEF2B, CBX3, POU5F1, CEBPA, SMC1A, EBF1, ZFX, RUNX1T1, ZNF317, XBP1, ZBTB33, MEF2C, MLL4, KDM1A, TFAP4, ERG, HDGF, PBX1, ATF3, RUNX2, TRIP13, SMARCA4, NR3C1, ARID1B, RUNX3, ARNT, ATF4, CBFB, FOXK2, GATA3, PGR, ZNF143, CDK8, MED1, VDR, CEBPG, ZNF592, CEBPB, JMJD1C, ESRRA, TRIM28, MYB, KMT2A, NR2F1, ZMYM3, MLLT1, LMO2, TP53, ESR1, TP73, MLL, MED, SETDB1, EVI1, CTCF, BCL11A, SPI1, AR, DPF2, HDAC2, RXR, TRIM24, ZNF605, BRD4, SMARCA5, BCOR, TCF3, ZNF350, ZNF280A, TEAD4, KMT2B, ZNF24, EHMT2, ZNF316

Target gene symbol (double-evidenced CRMs): TIAM1,CFAP298,HUNK,MIS18A,PAXBP1,SYNJ1,CFAP298-TCP10L

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000156299, ENSG00000142149, ENSG00000159055, ENSG00000265590, ENSG00000159079, ENSG00000159082, ENSG00000159086,

eachgene

Deatailed information for cohesin site CDBP00416718