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Basic information

CohesinDB ID: CDBP00416719

Locus: chr21-31749551-31751240

Data sourse: GSE67783, GSE86191, ENCSR000BSB, GSE206145, GSE206145-NatGen2015

Cell type: RPE, Fibroblast, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: Mau2,SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 68% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 88%, "14_ReprPCWk": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NFIA, POU2F2, ZSCAN5D, ZFX, ZNF534, XBP1, WT1, FOXA1, HOXB13, RELA, NFIC, SMARCA4, MCM3, PRDM1, ARNT, NFIB, GRHL3, ZNF736, NCOA3, TEAD3, EZH2, ZNF3, BCL11A, AR, GATA2, ZNF479, ZBTB42, NOTCH3, BRD4, CLOCK, MAZ, SMC3

Target gene symbol (double-evidenced CRMs): CFAP298-TCP10L,HUNK,CFAP298,PAXBP1,MIS18A,TIAM1,SYNJ1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene: ENSG00000156299, ENSG00000142149, ENSG00000159055, ENSG00000265590, ENSG00000159079, ENSG00000159082, ENSG00000159086,

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Deatailed information for cohesin site CDBP00416719