- Basic information
- CohesinDB ID: CDBP00416729
- Locus: chr21-31774067-31774624
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, CBX5, MEIS2, XBP1, FOXA1, PBX2, HDGF, NFIC, HNRNPUL1, RUNX3, PRDM1, CBFB, PAX5, MITF, ZNF320, BACH2, JMJD1C, BCLAF1, TRIM28, ZNF217, ESR1, OCA2, MLL, USF2, CTCF, TCF12, JUN, EP300, DPF2, PAX8, TRIM24, IRF4, RAD51, KMT2B, GTF2F1, PDX1, RBPJ, EED, TFAP2C, GLIS1, POU2F2, CHD8, ZSCAN5D, CDK7, ID3, MTA2, ZBTB48, ZSCAN5A, STAT1, ZNF205, SRF, MLLT3, DDX5, NBN, ARID3A, ERG, MYC, RAD21, GRHL3, GABPA, STAT3, IKZF1, TERF2, CD74, VDR, NR3C1, CEBPB, KMT2A, CREB1, TBL1XR1, EZH2, SPI1, IRF1, SMARCA5, RELB, RUNX1, MAFG, BCL6, SMC1A, CEBPA, ZFX, POU4F2, TRIM22, PRDM10, MEF2A, CREBBP, ZNF384, ZBTB2, ARNT, SOX11, ATF2, PRDM9, FOXM1, ETV6, CDK8, MED1, PML, TERF1, MYB, SCRT2, ZMYM3, C11orf30, STAT5A, USF1, SP1, NIPBL, BCL11A, MAFK, REST, RBM25, ATF7, POU2F3, ASH2L, BCOR, FOXP1, TCF3, SMC3, NCOR2, MLLT1, STAG1, NFATC3, MEF2B, ZNF207, MTA3, CREM, EBF1, NFATC1, E2F8, ZSCAN16, ZBED1, GTF2B, FOXF1, ZBTB33, MEF2C, CDK9, RELA, TARDBP, JUNB, AHR, NEUROD1, SP140, ZFP36, SKIL, TCF4, OTX2, BATF, MAX, SPIB, HAND2, GFI1B, NR2F1, PKNOX1, ZBTB6, ZNF334, MYOD1, TBX21, BHLHE40, AR, ZBTB40, RXR, RNF2, IKZF2, BRD4, JUND, NCOR1, SCRT1, ZNF24, ZNF316
- Target gene symbol (double-evidenced CRMs): SCAF4,HUNK,MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000156304,
ENSG00000142149,
ENSG00000159055,
- Related loop:
chr21:10425000-10450000~~chr21:31775000-31800000,
chr21:31730164-31731503~~chr21:31771972-31774192,
chr21:31731849-31734483~~chr21:31771972-31774192,
chr21:31732064-31733263~~chr21:31771956-31774066,
chr21:31750000-31775000~~chr21:31850000-31875000,
chr21:31750000-31775000~~chr21:31950000-31975000,
chr21:31750000-31775000~~chr21:32250000-32275000,
chr21:31775000-31800000~~chr21:31875000-31900000,
chr21:31775000-31800000~~chr21:31950000-31975000,
chr21:31775000-31800000~~chr21:32175000-32200000,
chr21:31775000-31800000~~chr21:32225000-32250000,
chr21:31775000-31800000~~chr21:32250000-32275000,