- Basic information
- CohesinDB ID: CDBP00416731
- Locus: chr21-31778677-31779057
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Data sourse: GSE116344, GSE67783, GSE86191
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Cell type: RH4, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 91%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, ZNF263, MYCN, POU5F1, ZFX, WT1, RELA, MCM3, HIF1A, ZNF143, FOS, ARNTL, KLF4, EZH2, TP53, CTCF, JUN, BCL11A, AR, FLI1, NOTCH3, MAZ, STAG1
- Target gene symbol (double-evidenced CRMs): HUNK,MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000142149,
ENSG00000159055,
- Related loop:
chr21:10425000-10450000~~chr21:31775000-31800000,
chr21:31730164-31731503~~chr21:31771972-31774192,
chr21:31731849-31734483~~chr21:31771972-31774192,
chr21:31732064-31733263~~chr21:31771956-31774066,
chr21:31750000-31775000~~chr21:31850000-31875000,
chr21:31750000-31775000~~chr21:31950000-31975000,
chr21:31750000-31775000~~chr21:32250000-32275000,
chr21:31775000-31800000~~chr21:31875000-31900000,
chr21:31775000-31800000~~chr21:31950000-31975000,
chr21:31775000-31800000~~chr21:32175000-32200000,
chr21:31775000-31800000~~chr21:32225000-32250000,
chr21:31775000-31800000~~chr21:32250000-32275000,
chr21:31780113-31781908~~chr21:32257425-32259313,
chr21:31780114-31782449~~chr21:31872029-31874883,
chr21:31780114-31782449~~chr21:32099458-32101030,
chr21:31780114-31782449~~chr21:32257201-32259301,
chr21:31780119-31781903~~chr21:32257467-32259276,
chr21:31780122-31781850~~chr21:32257426-32259309,
chr21:31780127-31781738~~chr21:32257453-32259309,
chr21:31780134-31782078~~chr21:32256511-32259378,
chr21:31780142-31781787~~chr21:32257174-32259289,
chr21:31780142-31781815~~chr21:32257381-32259299,
chr21:31780158-31781873~~chr21:32256411-32259438,
chr21:31780165-31781913~~chr21:32099650-32100808,
chr21:31780165-31781913~~chr21:32257185-32259313,
chr21:31780170-31781740~~chr21:32257456-32259286,
chr21:31780176-31781715~~chr21:32257195-32260019,
chr21:31780231-31781818~~chr21:32257685-32259278,
chr21:31780232-31781825~~chr21:32257190-32259329,
chr21:31780232-31781825~~chr21:32599877-32601833,
chr21:31780359-31781760~~chr21:32257354-32259325,
chr21:31780368-31781705~~chr21:32257665-32259284,
chr21:31780374-31781732~~chr21:32257419-32259297,
chr21:31780426-31781750~~chr21:32257414-32259287,
chr21:31780470-31781721~~chr21:32257487-32259412,
chr21:31780493-31781691~~chr21:32257422-32259254,