- Basic information
- CohesinDB ID: CDBP00416735
- Locus: chr21-31795940-31796354
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Data sourse: GSE138405, GSE206145-NatGen2015, GSE126990
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Cell type: Hela-Kyoto, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 64%,
"14_ReprPCWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, CREBBP, ZNF750, CEBPB, JUNB, KLF4, ZFX, PBX4, ESR1, ZBTB17, NKX2-1, FEZF1, KLF1, JUN, FOS, RCOR1
- Target gene symbol (double-evidenced CRMs): MIS18A,HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000142149,
ENSG00000159055,
- Related loop:
chr21:10425000-10450000~~chr21:31775000-31800000,
chr21:31775000-31800000~~chr21:31875000-31900000,
chr21:31775000-31800000~~chr21:31950000-31975000,
chr21:31775000-31800000~~chr21:32175000-32200000,
chr21:31775000-31800000~~chr21:32225000-32250000,
chr21:31775000-31800000~~chr21:32250000-32275000,
chr21:31800000-31825000~~chr21:31950000-31975000,
chr21:31800000-31825000~~chr21:32225000-32250000,