- Basic information
- CohesinDB ID: CDBP00416741
- Locus: chr21-31843522-31843806
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 66%,
"14_ReprPCWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, SMC1A, NANOG, FOXA2, POU5F1, AGO1, MYCN, CHD8, ZFX, CEBPA, XBP1, SOX2, FOXA1, HLF, CDK9, HOXB13, TBP, KDM4A, ZNF184, RAD21, PRDM1, ARNT, TCF4, GATA1, VDR, KLF4, CEBPB, JMJD1C, MYB, ZNF512, EPAS1, ZNF573, EZH2, CTCF, USF1, SPI1, AR, GATA6, HDAC2, ZNF366, BRD4, AHR
- Target gene symbol (double-evidenced CRMs): HUNK,MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops