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Basic information

CohesinDB ID: CDBP00416742

Locus: chr21-31845092-31845578

Data sourse: ENCSR000BLD, GSE105028, ENCSR000ECE, GSE111537, GSE145327, GSE97394

Cell type: H1-hESC, HUES64, OCI-AML-3, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: non-Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 71% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 61%, "14_ReprPCWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, PGR, SMC1A, NANOG, FOXA2, POU5F1, AGO1, MYCN, CHD8, ZFX, CEBPA, XBP1, SOX2, FOXA1, HLF, CDK9, HOXB13, TBP, KDM4A, ZNF184, RAD21, PRDM1, ARNT, TCF4, GATA1, VDR, KLF4, CEBPB, JMJD1C, MYB, ZNF512, EPAS1, ZNF573, EZH2, CTCF, USF1, SPI1, AR, GATA6, HDAC2, ZNF366, BRD4, AHR

Target gene symbol (double-evidenced CRMs): HUNK,MIS18A

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000142149, ENSG00000159055,

eachgene

Deatailed information for cohesin site CDBP00416742