Browse_each

Basic information

CohesinDB ID: CDBP00416745

Locus: chr21-31851015-31851259

Data sourse: GSE67783, GSE86191

Cell type: HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 71% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 63%, "14_ReprPCWk": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF283, POU2F2, CHD8, TBL1X, MYCN, TOP2A, ZNF534, ZFX, XBP1, WT1, ZBTB48, TET2, ZNF485, YY1, MYC, THAP1, SP140, GRHL3, ARNT, NKX2-1, NCOA3, EZH2, CTCF, SPI1, GSPT2, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): SYNJ1,CFAP298,TIAM1,URB1,CFAP298-TCP10L,SCAF4,HUNK,MIS18A

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156299, ENSG00000156304, ENSG00000142149, ENSG00000159055, ENSG00000142207, ENSG00000265590, ENSG00000159079, ENSG00000159082,

eachgene

Deatailed information for cohesin site CDBP00416745