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Basic information

CohesinDB ID: CDBP00416747

Locus: chr21-31855210-31855593

Data sourse: GSE138405, GSE116344, GSE126990

Cell type: Hela-Kyoto, RH4

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21,SA2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 71% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 64%, "14_ReprPCWk": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF384, BCL6, FOXA2, ZSCAN5D, FOXA1, BCL6B, MYOD1, DDX5, TEAD4, HOXB13, TFAP2A, TFAP2C

Target gene symbol (double-evidenced CRMs): MIS18A,SCAF4,CFAP298-TCP10L,SYNJ1,CFAP298,HUNK,TIAM1,URB1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000156299, ENSG00000156304, ENSG00000142149, ENSG00000159055, ENSG00000142207, ENSG00000265590, ENSG00000159079, ENSG00000159082,

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Deatailed information for cohesin site CDBP00416747