- Basic information
- CohesinDB ID: CDBP00416751
- Locus: chr21-31864316-31868880
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Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE115248, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, HSPC, CVI-hiPSC, Liver, GP5d, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, GBM39, HUES9, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, GM19238, HeLa, BGO3, TC-71, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 76% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.167
- Subunit: SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"14_ReprPCWk": 40%,
"15_Quies": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MYC, ZNF263, ZFX, HSF1, GRHL3, EZH2, WT1, NKX2-1, MAX, ZNF143, ZNF596
- Target gene symbol (double-evidenced CRMs): HUNK,SCAF4,SYNJ1,CFAP298,CFAP298-TCP10L,MIS18A,URB1,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 24
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000156304,
ENSG00000142149,
ENSG00000159055,
ENSG00000142207,
ENSG00000265590,
ENSG00000159079,
ENSG00000159082,
- Related loop:
chr21:31200000-31225000~~chr21:31850000-31875000,
chr21:31622589-31624532~~chr21:31873410-31874559,
chr21:31622590-31624578~~chr21:31865202-31867213,
chr21:31725000-31750000~~chr21:31850000-31875000,
chr21:31750000-31775000~~chr21:31850000-31875000,
chr21:31780114-31782449~~chr21:31872029-31874883,
chr21:31785215-31787339~~chr21:31865526-31867042,
chr21:31785255-31787043~~chr21:31872357-31875603,
chr21:31785270-31788289~~chr21:31865214-31867338,
chr21:31785270-31788289~~chr21:31872029-31874883,
chr21:31785286-31787343~~chr21:31872323-31873497,
chr21:31850000-31875000~~chr21:31950000-31975000,
chr21:31850000-31875000~~chr21:31975000-32000000,
chr21:31850000-31875000~~chr21:32050000-32075000,
chr21:31850000-31875000~~chr21:32075000-32100000,
chr21:31850000-31875000~~chr21:32150000-32175000,
chr21:31850000-31875000~~chr21:32250000-32275000,
chr21:31850000-31875000~~chr21:32275000-32300000,
chr21:31850000-31875000~~chr21:32375000-32400000,
chr21:31850000-31875000~~chr21:32575000-32600000,
chr21:31850000-31875000~~chr21:32600000-32625000,
chr21:31865157-31867306~~chr21:32257685-32259278,
chr21:31865168-31867682~~chr21:32142694-32144879,
chr21:31865168-31867682~~chr21:32256342-32259326,
chr21:31865180-31867368~~chr21:32257185-32259313,
chr21:31865190-31867889~~chr21:32075693-32077755,
chr21:31865190-31867889~~chr21:32256367-32259995,
chr21:31865192-31867355~~chr21:32257195-32259363,
chr21:31865195-31867134~~chr21:32257381-32259299,
chr21:31865197-31867074~~chr21:32256511-32259378,
chr21:31865202-31867213~~chr21:32257174-32259289,
chr21:31865202-31867229~~chr21:32257395-32259361,
chr21:31865202-31867229~~chr21:32825802-32827847,
chr21:31865206-31867094~~chr21:32256476-32259292,
chr21:31865207-31867006~~chr21:32256496-32259419,
chr21:31865209-31867146~~chr21:32257476-32259450,
chr21:31865210-31867077~~chr21:32257453-32259309,
chr21:31865211-31867117~~chr21:32257438-32259314,
chr21:31865214-31867338~~chr21:32257201-32259301,
chr21:31865217-31867110~~chr21:32257228-32259294,
chr21:31865220-31867254~~chr21:32256411-32259438,
chr21:31865221-31867042~~chr21:32257414-32259264,
chr21:31865221-31867070~~chr21:32257315-32259388,
chr21:31865222-31867020~~chr21:32257456-32259286,
chr21:31865228-31867355~~chr21:32257190-32259329,
chr21:31865230-31867361~~chr21:32256274-32259275,
chr21:31865232-31867115~~chr21:32257195-32260019,
chr21:31865233-31867108~~chr21:32257487-32259412,
chr21:31865235-31867832~~chr21:32257485-32259289,
chr21:31865244-31867006~~chr21:32257426-32259309,
chr21:31865247-31867652~~chr21:32257419-32259292,
chr21:31865248-31867144~~chr21:32256462-32259302,
chr21:31865248-31867144~~chr21:32598994-32601796,
chr21:31865252-31867066~~chr21:32257486-32259262,
chr21:31865272-31867342~~chr21:32256341-32259331,
chr21:31865272-31867342~~chr21:32599933-32601810,
chr21:31865293-31867052~~chr21:32257402-32259244,
chr21:31865357-31867257~~chr21:32257638-32259280,
chr21:31865428-31867009~~chr21:32257414-32259287,
chr21:31865442-31866981~~chr21:32257354-32259325,
chr21:31865442-31866981~~chr21:32599635-32601835,
chr21:31865450-31867127~~chr21:32257447-32259293,
chr21:31865459-31867029~~chr21:32257757-32259222,
chr21:31865464-31867091~~chr21:32256545-32259247,
chr21:31865464-31867092~~chr21:32257192-32259306,
chr21:31865470-31866930~~chr21:32257417-32259304,
chr21:31865481-31867115~~chr21:32257677-32259293,
chr21:31865496-31866966~~chr21:32257419-32259297,
chr21:31865505-31867043~~chr21:32256543-32259299,
chr21:31865515-31867075~~chr21:32257445-32259345,
chr21:31865537-31866893~~chr21:32257665-32259284,
chr21:31865585-31866840~~chr21:32257379-32259282,
chr21:31865594-31866849~~chr21:32257485-32259262,
chr21:31871809-31875540~~chr21:32256411-32259438,
chr21:31872039-31874494~~chr21:32256511-32259378,
chr21:31872042-31874581~~chr21:32256342-32259326,
chr21:31872118-31875754~~chr21:32256367-32259995,
chr21:31872126-31874557~~chr21:32257195-32259363,
chr21:31872415-31873934~~chr21:32257185-32259313,
chr21:31872509-31873790~~chr21:32257190-32259329,
chr21:31872517-31873744~~chr21:32257476-32259450,
chr21:31872680-31874526~~chr21:32577373-32579026,