Deatailed information for cohesin site CDBP00416756


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  • Basic information
  • CohesinDB ID: CDBP00416756
  • Locus: chr21-31885133-31885977
  • Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
  • Cell type: Fibroblast, HCT-116, HSPC
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 1% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.967
  • Subunit: SA1,Rad21,SA2
  • CTCF binding site: non-CTCF CTCF motif: False
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
  • Compartment: 71% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): True
  • Chromatin annotation: "15_Quies": 54%, "14_ReprPCWk": 25%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: CEBPA, TBL1X, ZFX, WT1, ZBTB48, ZSCAN5A, TET2, YY1, ATF3, THAP1, SP140, GRHL3, XRCC5, CEBPB, OCA2, CTCF, MXD3, ZNF548, MAZ, SMC3, STAG1
  • Target gene symbol (double-evidenced CRMs): HUNK,MIS18A
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 5
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops

Tools:
  • Assay

refGene

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Ruler

chr21q22.1130400K30500K30600K30700K30800K30900K31000K31100K31200K31300K31400K31500K31600K31700K31800K31900K32000K32100K32200K32300K32400K32500K32600K32700K32800K32900K33000K33100K33200K33300K

Cohesin site CDBP00416756

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CDBP00416756 regulated genes

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Related cohesin loop

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