- Basic information
- CohesinDB ID: CDBP00416758
- Locus: chr21-31887520-31887771
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Data sourse: ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 50%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF283, CBFA2T2, CHD8, PPARG, CEBPA, EZH2phosphoT487, ZFX, ZNF534, CTBP1, ZBTB17, ZBTB48, ZSCAN5A, XBP1, HLF, SUZ12, HOXB13, SMARCC1, ZNF300, KDM1A, RELA, JUNB, ATF3, MYC, ZFP64, ZNF184, ARID1B, RAD21, GRHL3, HIF1A, HMBOX1, SMAD4, STAT3, XRCC5, CBFA2T3, SP2, MAX, TAL1, ZNF614, GABPA, GATA1, CEBPG, CEBPB, PML, TRIM28, CEBPD, CREB1, NR2F2, EZH2, OCA2, MYOD1, STAT5A, CTCF, TCF12, BCL11A, BHLHE40, AR, DPF2, HDAC2, TRIM24, SOX6, ZBTB26, RNF2, NOTCH3, NCOR1, TEAD4
- Target gene symbol (double-evidenced CRMs): MIS18A,HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops