- Basic information
- CohesinDB ID: CDBP00416760
- Locus: chr21-31890447-31891698
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Data sourse: ENCSR230ZWH, GSE72082, ENCSR501LQA, GSE165895, ENCSR000EFJ, GSE67783, GSE138405, GSE206145-NatGen2015, ENCSR806UKK, GSE135093, ENCSR895JMI, ENCSR193NSH, ENCSR768DOX, ENCSR981FDC, ENCSR807WAC, ENCSR620NWG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR054FKH, ENCSR537EFT, GSE126990, ENCSR748MVX
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Cell type: Fibroblast, Hela-Kyoto, Hep-G2, A-549, IMR-90, Liver, HSPC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 40%,
"5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, HMG20A, FOXA1, HLF, INSM2, ATF3, PRDM1, ZNF189, MZF1, ZNF629, TEAD1, ETV1, ESR1, JUN, TCF12, EP300, BAF155, MNT, RFX5, FOXA3, GATAD2A, ZSCAN21, SAP130, TBP, ERG, OGG1, SMARCA4, RFX1, TSHZ1, RAD21, GRHL3, NKX2-1, STAT3, NKX3-1, RCOR1, ZNF639, NR3C1, CEBPB, EZH2, KLF8, GATA2, MXI1, NFIL3, BCL6, CEBPA, EZH2phosphoT487, SIN3A, SOX13, SMAD3, SMARCC1, PRDM10, ZNF35, ZNF184, PBX4, ZEB2, PBX3, FOS, SCRT2, PIAS1, MAFK, HNF4A, ARID1A, POU2F3, PHIP, FOXP1, PRDM6, ZNF394, FOXA2, SS18, ZNF600, ZNF692, ZSCAN16, ZNF574, HOXB13, KDM1A, RELA, JUNB, BRG1, GATA3, MAX, TLE3, CEBPG, SP7, TP53, NFKB1, BHLHE40, AR, ZNF366, BRD4, JUND, MAZ, FOSL2
- Target gene symbol (double-evidenced CRMs): HUNK,MIS18A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops