- Basic information
- CohesinDB ID: CDBP00416769
- Locus: chr21-31910132-31910784
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Data sourse: ENCSR000BLD, GSE206145-NatGen2015
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Cell type: H1-hESC, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 28%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOXA1, HLF, RXRB, KDM3A, TEAD1, OCA2, MED26, PITX3, SOX5, ZNF528, RFX3, GATAD2A, JARID2, NANOG, POU5F1, BRD3, TOP2A, ZNF263, CTBP1, DUX4, SAP130, ERG, SMARCA4, RFX1, FOXK2, RCOR1, NR2F6, CEBPB, CREB1, GABPB1, ZHX2, MIXL1, GATA2, ZNF644, MXD3, SIX2, FLI1, DRAP1, MXI1, RELB, RUNX1, CEBPA, NKX2-2, TET2, SP5, SMARCC1, ZNF549, PRDM10, ZBTB2, ZXDC, ZBTB10, ATF2, SP2, SMARCB1, PIAS1, SMAD1, MBD1, GSPT2, IKZF5, ETV4, MEF2B, CREM, SS18, WT1, NEUROD1, MCM3, TCF4, SPIB, KLF4, ZFP69B, ZBTB6, EGR2, ELF3, ARID4B, RXR, EGLN2, ZNF366, ZBTB26, NCOR1, SCRT1, XBP1, HNF1A, ZNF596, TSC22D4, CDK2, ATF3, THRB, ZFP64, HNRNPUL1, TP63, ZSCAN4, ZNF467, MYOG, JMJD1C, ELF1, ZNF573, RBM39, KLF10, CTCF, JUN, LMO1, MNT, DPF2, ZNF350, PDX1, TFAP2C, RBPJ, MLX, ZSCAN21, ZBTB17, ZBTB48, ZNF317, NONO, DDX5, ONECUT1, HOMEZ, RXRA, PRDM14, MIER3, HNRNPH1, NR3C1, ESRRA, CCAR2, KLF8, GRHL2, EBF3, SSRP1, NFIL3, THAP11, ZNF585A, EZH2phosphoT487, SOX13, ZNF770, SP3, ARNT, NFIB, ZNF48, PRDM9, PBX3, ZNF10, HMGXB4, TEAD3, U2AF1, KLF9, SP1, ZNF479, ATF7, ASH2L, CTBP2, PRDM6, SMC3, STAG1, ZNF394, TRP47, ZNF580, ZKSCAN1, KDM1A, BRG1, ISL1, ZIC2, PCGF1, GATA3, ZNF143, TP53, ZNF334, ZSCAN22, PHOX2B, BRD2, PHF5A, KAT8, BRD4, JUND, CUX1, ZSCAN23, TBX2, ZFP42, PGR, SOX2, PATZ1, TFAP4, BMI1, CHD7, MXD4, ZNF189, SMARCE1, KLF6, NFE2L2, ESR1, RFX5, GTF2F1, GLIS1, POU2F2, ZSCAN5D, ZSCAN5A, ERG2, TBP, HNF4G, OGG1, ETS1, MYC, NKX2-1, GABPA, MCRS1, STAT3, INO80, DNMT3B, EZH2, ZNF652, SPI1, HDAC2, GATAD2B, NFYB, ETV5, BCL6, SIN3A, ERG3, MYBL2, RARA, ZNF384, NFYC, CREBBP, SMAD4, ZEB1, RBM22, HNF4A, REST, ARID1A, BCOR, FOXP1, PPARG, ZNF692, GTF2B, ZNF30, TCF7, RELA, TARDBP, MAX, NR2F1, KDM5B, PKNOX1, MYOD1, PAX3-FOXO1, AR, ZNF324, DMAP1, AHR, FOSL2, HMG20A, SUZ12, RBFOX2, ZFHX2, SFMBT1, NFIC, ZNF362, PRDM1, ZNF736, CDX2, ZNF629, KLF5, TRIM28, ETV1, ZNF26, RCOR2, HNF1B, TCF12, EP300, BAF155, GATA6, E2F1, TEAD4, FOXA3, ZNF175, EED, CHD8, BRD1, MYCN, ZNF205, GATAD1, ARID3A, RAD21, GRHL3, PROX1, XRCC5, ZNF614, TCF25, FEZF1, TRPS1, TFE3, HBP1, ZGPAT, ZNF766, MRTFB, MYF5, CBX1, SMC1A, ZFX, ZNF534, SMAD3, PCBP2, CBX8, TWIST1, PRPF4, RUNX2, SMAD2, GATA4, OSR2, ZNF184, NRF1, PBX4, FOS, CHD1, TGIF2, MED1, MYB, SCRT2, ZNF3, L3MBTL2, ZBTB7A, PHIP, SKI, PAX7, ZNF283, FOXA2, RBBP5, MIER2, ZNF600, FOXF1, ZBTB33, CDK9, HOXB13, YY1, BRCA1, SP140, HIF1A, OTX2, ZNF449, HAND2, CEBPG, SP7, NR2F2, BHLHE40, NFKBIZ, TAF1, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops