- Basic information
- CohesinDB ID: CDBP00416772
- Locus: chr21-31914577-31914927
-
Data sourse: GSE138405, GSE206145-NatGen2015
-
Cell type: Hela-Kyoto, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 54%,
"5_TxWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFIA, HMG20A, FOXA1, RXRB, ZFHX2, THRB, ZNF362, MXD4, TEAD1, TRIM28, ETV1, RCOR2, ESR1, BAF155, EP300, SOX5, FOXA3, GTF2F1, GATAD2A, MLX, PDX1, RBPJ, ZNF263, POU5F1, TOP2A, ERF, ZBTB17, ZBTB48, GATAD1, SAP130, ERG, OGG1, HOMEZ, RAD21, RXRA, GABPA, ZNF614, NKX3-1, MIER3, NR2F6, NR3C1, CREB1, EZH2, MIXL1, TFE3, GATA2, DRAP1, ZGPAT, NFIL3, ETV5, RUNX1, THAP11, BCL6, CEBPA, EZH2phosphoT487, NKX2-2, SOX13, SIN3A, SP5, SMARCC1, PRDM10, RARA, ZNF384, ATF2, ZNF48, ZEB2, SMAD4, TEAD3, PIAS1, ARID2, IKZF5, ASH2L, PHIP, FOXP1, ETV4, PPARG, FOXA2, CREM, SS18, MIER2, TCF7, HOXB13, KDM1A, RELA, OTX2, GATA3, TLE3, CEBPG, BRD2, ELF3, KAT8, ARID4B, AR, ZNF366, BRD4
- Target gene symbol (double-evidenced CRMs): HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops