- Basic information
- CohesinDB ID: CDBP00416777
- Locus: chr21-31922902-31923422
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Data sourse: GSE116344, GSE67783, GSE83726
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Cell type: RH4, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 65%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, TRP47, EZH2phosphoT487, CREM, MYCN, ZFX, ZNF600, XBP1, ZSCAN16, NME2, PCBP2, ZBTB48, WT1, SUZ12, LEO1, TBP, PRDM10, HNRNPK, YY1, RELA, ASCL1, OGG1, NEUROD1, ATF3, MYC, ZNF184, RAD21, SP140, GRHL3, ARNT, ATF2, MAX, SMARCB1, CDK8, NCOA3, KLF5, CREB1, EZH2, OCA2, MYOD1, CTCF, RBM22, PCBP1, RXR, ZNF366, SIX2, MXD3, HEXIM1, BRD4, JUND, E2F1, MAZ, ATF1, TFAP2C, EED
- Target gene symbol (double-evidenced CRMs): HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 5
- Related genes and loops