- Basic information
- CohesinDB ID: CDBP00416779
- Locus: chr21-31927171-31929175
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Data sourse: GSE67783, GSE86191, GSE138405, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE206145-NatGen2015, ENCSR198ZYJ, GSE126990
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Cell type: Hela-Kyoto, Fibroblast, HCT-116, Neurons-H1, SK-N-SH, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SMC3,Rad21,SA2,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 49%,
"5_TxWk": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, CBX1, CBX3, POU5F1, TOP2A, ZNF317, ZNF580, KDM1A, ZNF184, ZNF8, TRIM28, ZMYM3, PIAS1, KLF8, ZNF140, ZNF260, RBM25, ZNF146, ZNF366, ZNF280D, BCOR, ZNF280A
- Target gene symbol (double-evidenced CRMs): HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 11
- Number of somatic mutations (non-coding): 0
- Related genes and loops