- Basic information
- CohesinDB ID: CDBP00416782
- Locus: chr21-31932637-31934436
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, ENCSR230ZWH, GSE72082, ENCSR000BSB, GSE116868, ENCSR000EGW, ENCSR000BLY, GSE105028, GSE121355, GSE103477, GSE111537, GSE131606, GSE108869, ENCSR000EDW, GSE25021, ENCSR000BUC, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE93080, GSE143937, GSE67783, ENCSR000BKV, GSE115250, GSE138405, GSE86191, GSE76893, GSE101921, GSE152721, GSE206145-NatGen2015, GSE130135, ENCSR703TNG, GSE106870, GSE116344, GSE145327, GSE94872, ENCSR000EEG, ENCSR338DUC, ENCSR193NSH, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR000ECE, ENCSR247LSH, ENCSR000BMY, ENCSR000EHX, GSE97394, ENCSR217ELF, ENCSR000BTQ, GSE55407, ENCSR167MTG, ENCSR956LGB, GSE110061, GSE129526, ENCSR000HPG, ENCSR335RKQ, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE83726, GSE126990, GSE50893, GSE131577
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Cell type: MDM, RH4, GM2610, CVB-hiPSC, GM19240, HSPC, Liver, TC-32, HuCC-T1, H9-hESC, GM2630, Fibroblast, Ishikawa, HeLa-S3, IMR-90, K-562, DKO, H1-hESC, MB157, GM12878, SK-N-SH, THP-1, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, A-549, HUVEC, HCAEC, OCI-AML-3, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 29% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.600
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 44%,
"5_TxWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, FOXA2, ZNF263, CREM, POU5F1, TEAD4, CTBP1, SMAD3, FOXA1, FOXF1, SRF, ERG3, SUZ12, ZNF134, PBX2, ARID3A, HOXB13, ERG2, PRDM10, ERG, KDM1A, HOXC5, ZBTB2, ZNF384, ZNF35, YY1, ZNF341, NEUROD1, MYC, RAD21, SP140, ARNT, HIF1A, OTX2, NKX2-1, GATA3, XRCC5, ZNF614, NKX3-1, ZNF143, HMGXB4, RCOR1, GATA1, MITF, ZNF467, GFI1B, TEAD3, TCF7L2, NFE2L2, CCAR2, EZH2, ESR1, OCA2, KLF9, CTCF, ELF3, BRD2, SP1, BAF155, SPI1, BHLHE40, BCL11A, REST, GATA2, SOX6, ASH2L, NCOR1, JUND, MAZ, SMC1, SMC3, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops