- Basic information
- CohesinDB ID: CDBP00416783
- Locus: chr21-31938380-31938792
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Data sourse: GSE120943, ENCSR000EHX
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Cell type: Monocytes, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 55%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SOX2, NME2, XBP1, FOXA1, ZNF362, PAX5, TEAD1, ETV1, ESR1, MED26, PITX3, CTCF, BAF155, SOX5, GATA6, FOXA3, GATAD2A, TFAP2C, EED, CHD8, BRD1, BRD3, TOP2A, ZSCAN21, ERF, ZBTB48, DUX4, SAP130, TBP, ERG, ASCL1, MYC, HOMEZ, GRHL3, GABPA, STAT3, ZNF614, XRCC5, ARNTL, NR3C1, ESRRA, CEBPB, ZNF750, EZH2, FEZF1, EBF3, SPI1, MIXL1, GATA2, SIX2, ETV5, RUNX1, SOX13, SIN3A, ZFX, NFYC, ZNF384, GATA4, GR, ARNT, PRDM9, ZNF22, HNF4A, REST, ZNF479, RBM25, POU2F3, PHIP, TCF3, FOXP1, PRDM6, ZNF623, NCOR2, ETV4, PPARG, FOXA2, CREM, ZNF692, HOXB13, KDM1A, RELA, NEUROD1, HIF1A, OTX2, GATA3, MAX, ZNF143, GATA1, HAND2, TLE3, PHOX2B, ELF3, BRD2, T, ARID4B, AR, PAX3-FOXO1, SCRT1, BRD4, TBX2, ZNF316
- Target gene symbol (double-evidenced CRMs): HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops