- Basic information
- CohesinDB ID: CDBP00416785
- Locus: chr21-31948121-31948607
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Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 47%,
"4_Tx": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, PGR, ZNF496, SOX2, XBP1, FOXA1, UBTF, MLL4, HNRNPK, LYL1, ATF3, ZBTB5, CHD7, PRDM1, ZNF189, TP63, ZNF467, JMJD1C, ETV1, LMO2, ESR1, OCA2, CTCF, TCF12, JUN, ARID5B, LMO1, GATA6, KMT2B, ZNF175, PDX1, TFAP2C, NANOG, POU2F2, CHD8, ZSCAN5D, POU5F1, MYCN, TOP2A, CDK7, ZNF263, CTBP1, RUNX1T1, ZBTB17, DUX4, ZBTB48, ERG, HOXC5, OGG1, EZH1, MYC, SMARCA4, RAD21, GRHL3, PROX1, GABPA, STAT3, XRCC5, NKX3-1, IKZF1, RCOR1, DNMT3B, ZNF639, ARNTL, NR3C1, CEBPB, EZH2, PHF8, SPI1, PCBP1, GATA2, MXI1, ZNF766, HCFC1R1, ZIM3, RUNX1, BCL6, CEBPA, EZH2phosphoT487, SIN3A, ZFX, PCBP2, TET2, SMARCC1, PRDM10, ZNF384, NOTCH1, RUNX2, GATA4, ARNT, NRF1, TFDP1, HMGB2, PRDM9, PBX3, FOS, CDK8, MED1, MYB, SCRT2, PIAS1, TAF7, RBM22, USF1, BCL11A, TFAP2A, NIPBL, IKZF5, REST, ZNF479, TCF3, SMC3, NCOR2, STAG1, ZNF283, ZNF316, FOXA2, TBL1X, SS18, ZSCAN16, WT1, FOXF1, TCF7, CDK9, HOXB13, KDM1A, YY1, RELA, NEUROD1, SP140, TCF4, HIF1A, OTX2, GATA3, BHLHE22, TAL1, MAX, SPIB, GATA1, AGO2, KLF4, NEUROG2, TP53, ZNF334, MYOD1, AR, TAF1, ZNF366, EGR1, HSF1, NOTCH3, BRD4, JUND, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): HUNK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000142149,
- Related loop:
chr21:31375000-31400000~~chr21:31950000-31975000,
chr21:31600000-31625000~~chr21:31950000-31975000,
chr21:31725000-31750000~~chr21:31950000-31975000,
chr21:31750000-31775000~~chr21:31950000-31975000,
chr21:31775000-31800000~~chr21:31950000-31975000,
chr21:31800000-31825000~~chr21:31950000-31975000,
chr21:31825000-31850000~~chr21:31950000-31975000,
chr21:31850000-31875000~~chr21:31950000-31975000,
chr21:31925000-31950000~~chr21:32175000-32200000,
chr21:31950000-31975000~~chr21:32075000-32100000,
chr21:31950000-31975000~~chr21:32225000-32250000,
chr21:31950000-31975000~~chr21:32250000-32275000,
chr21:31950000-31975000~~chr21:33700000-33725000,