- Basic information
- CohesinDB ID: CDBP00416788
- Locus: chr21-31954932-31955194
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Data sourse: ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
71% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 62%,
"5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ARNTL, PAX8, NCOA3, POU2F3, ZFX, EZH2, PRKDC, NCOR1, JUN, ZBTB48, HCFC1R1, CTCF, RBM22, BCL11A
- Target gene symbol (double-evidenced CRMs): HUNK,MIS18A,TIAM1,AP000311.1,ITSN1,SCAF4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156299,
ENSG00000156304,
ENSG00000142149,
ENSG00000159055,
ENSG00000249209,
ENSG00000205726,
- Related loop:
chr21:31375000-31400000~~chr21:31950000-31975000,
chr21:31600000-31625000~~chr21:31950000-31975000,
chr21:31725000-31750000~~chr21:31950000-31975000,
chr21:31750000-31775000~~chr21:31950000-31975000,
chr21:31775000-31800000~~chr21:31950000-31975000,
chr21:31800000-31825000~~chr21:31950000-31975000,
chr21:31825000-31850000~~chr21:31950000-31975000,
chr21:31850000-31875000~~chr21:31950000-31975000,
chr21:31925000-31950000~~chr21:32175000-32200000,
chr21:31950000-31975000~~chr21:32075000-32100000,
chr21:31950000-31975000~~chr21:32225000-32250000,
chr21:31950000-31975000~~chr21:32250000-32275000,
chr21:31950000-31975000~~chr21:33700000-33725000,