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Basic information

CohesinDB ID: CDBP00416788

Locus: chr21-31954932-31955194

Data sourse: ENCSR153HNT, GSE86191

Cell type: K-562, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 71% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 62%, "5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ARNTL, PAX8, NCOA3, POU2F3, ZFX, EZH2, PRKDC, NCOR1, JUN, ZBTB48, HCFC1R1, CTCF, RBM22, BCL11A

Target gene symbol (double-evidenced CRMs): HUNK,MIS18A,TIAM1,AP000311.1,ITSN1,SCAF4

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156299, ENSG00000156304, ENSG00000142149, ENSG00000159055, ENSG00000249209, ENSG00000205726,

Tools:

Assay

refGene

Ruler

Cohesin site CDBP00416788

CDBP00416788 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00416788

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